D4A1X0_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000021254 T41144_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.965
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.789
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.789
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.789
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000057799 RRM 11 80
ENSRNOP00000057799 RRM 102 172

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

181 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.965
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.965
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.965
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.965
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.965
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.965
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.965
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.965
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.965
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.965
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.965
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.965
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.965
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.965
LOC100068539 Equus caballus ENSECAG00000000782 I 0.965
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.965
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.965
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.965
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.965
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.965
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.965
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.965
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.958
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.958
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.958
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.958
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.958
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.958
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.958
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.951
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.951
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.951
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.930
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.908
CBF67577 Xenopus laevis CBF67577 I 0.901
AAH46692 Xenopus laevis AAH46692 I 0.901
CBU92450 Xenopus laevis CBU92450 I 0.901
P51989 Xenopus laevis P51989 I 0.901
AAA49948 Xenopus laevis AAA49948 I 0.901
P51990 Xenopus laevis P51990 I 0.880
AAB59951 Xenopus laevis AAB59951 I 0.880
AAH43750 Xenopus laevis AAH43750 I 0.880
AAI06633 Xenopus laevis AAI06633 I 0.880
HNRNPA2B1 Vicugna pacos ENSVPAG00000010417 I 0.866
ENSSSCG00000013607 Sus scrofa ENSSSCG00000013607 I 0.866
ENSSSCG00000012503 Sus scrofa ENSSSCG00000012503 I 0.841
LOC516616 Bos taurus ENSBTAG00000002284 I 0.838
ENSSSCG00000016710 Sus scrofa ENSSSCG00000016710 I 0.822
HNRNPA2B1 Tupaia belangeri ENSTBEG00000003219 I 0.814
ENSSSCG00000013561 Sus scrofa ENSSSCG00000013561 I 0.779
ENSSSCG00000013557 Sus scrofa ENSSSCG00000013557 I 0.779
ENSBTAG00000020849 Bos taurus ENSBTAG00000020849 I 0.779
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.754
HNRNPA2B1 Ochotona princeps ENSOPRG00000011698 I 0.754
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.741
ENSBTAG00000011195 Bos taurus ENSBTAG00000011195 I 0.738
LOC538435 Bos taurus ENSBTAG00000038680 I 0.738
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.735
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.735
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.728
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.728
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.728
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.728
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.728
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.728
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.728
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.728
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.728
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.728
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.728
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.728
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.728
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.728
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.728
HNRNPA1 Homo sapiens ENSG00000135486 D 0.728
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.728
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.728
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.728
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.728
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.728
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.728
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.728
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.728
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.728
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.728
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.728
AAH45260 Xenopus laevis AAH45260 I 0.728
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.728
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.728
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.723
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.721
AAA49950 Xenopus laevis AAA49950 I 0.721
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.721
CBF67578 Xenopus laevis CBF67578 I 0.721
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.721
AAI69881 Xenopus laevis AAI69881 I 0.721
CBU92451 Xenopus laevis CBU92451 I 0.721
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.721
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.721
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.721
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.721
P51992 Xenopus laevis P51992 I 0.721
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.721
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.721
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.721
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.720
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.719
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.719
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.714
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.714
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.714
P51968 Xenopus laevis P51968 I 0.714
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.714
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.714
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.714
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.714
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.714
AAH72090 Xenopus laevis AAH72090 I 0.714
AAA49949 Xenopus laevis AAA49949 I 0.714
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.714
CBF67672 Xenopus laevis CBF67672 I 0.714
CBU92546 Xenopus laevis CBU92546 I 0.714
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.712
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.707
LOC785445 Bos taurus ENSBTAG00000025621 I 0.707
CBF67555 Xenopus laevis CBF67555 I 0.707
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.707
P17130 Xenopus laevis P17130 I 0.707
CBU92428 Xenopus laevis CBU92428 I 0.707
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.707
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.707
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.707
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.707
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.707
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.707
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.707
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.707
AAA49742 Xenopus laevis AAA49742 I 0.707
AAA49741 Xenopus laevis AAA49741 I 0.707
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.707
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.707
LOC100054206 Equus caballus ENSECAG00000006699 I 0.705
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.704
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.704
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.704
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.703
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.703
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.703
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.703
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.703
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.703
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.703
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.703
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.703
LOC781499 Bos taurus ENSBTAG00000021580 I 0.703
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.703
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.703
HNRNPA3 Homo sapiens ENSG00000170144 I 0.703
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.703
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.703
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.703
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.703
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.703
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.703
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.701
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.701
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.701
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.701
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.701
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.701
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.701
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.701
LOC100066794 Equus caballus ENSECAG00000023237 I 0.701
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.701
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.701
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.701
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.701
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.701
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.701
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.701
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.701