XM_002878068.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.5__2117__AT3G56860.3 T44552_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.5__2117__AT3G56860.3 RRM 143 211
fgenesh2_kg.5__2117__AT3G56860.3 RRM 248 317

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002879859.1 Arabidopsis lyrata scaffold_402914.1 N 0.878
AT2G41060 Arabidopsis thaliana AT2G41060-TAIR-G N 0.842
UBA2A Arabidopsis thaliana AT3G56860-TAIR-G N 0.978
BRADI2G09820 Brachypodium distachyon BRADI2G09820 N 0.707
PK11606.1 Cannabis sativa PK11606.1 N 0.729
PK27017.1 Cannabis sativa PK27017.1 N 0.806
Cucsa.250370 Cucumis sativus Cucsa.250370 N 0.827
Glyma02g44330.1 Glycine max Glyma02g44330.1 N 0.721
Glyma03g27290.1 Glycine max Glyma03g27290.1 N 0.835
Glyma14g04480.1 Glycine max Glyma14g04480.1 N 0.721
Glyma19g30250.1 Glycine max Glyma19g30250.1 N 0.842
MDP0000218409 Malus x domestica MDP0000218409 N 0.863
MDP0000381936 Malus x domestica MDP0000381936 N 0.835
MDP0000792725 Malus x domestica MDP0000792725 N 0.835
MDP0000905699 Malus x domestica MDP0000905699 N 0.863
cassava8977.m1 Manihot esculenta cassava8977.m1 N 0.813
cassava6906.valid.m1 Manihot esculenta cassava6906.valid.m1 N 0.799
cassava22358.valid.m1 Manihot esculenta cassava22358.valid.m1 N 0.755
cassava22357.valid.m1 Manihot esculenta cassava22357.valid.m1 N 0.755
cassava22355.valid.m1 Manihot esculenta cassava22355.valid.m1 N 0.763
cassava22354.valid.m1 Manihot esculenta cassava22354.valid.m1 N 0.763
cassava22353.valid.m1 Manihot esculenta cassava22353.valid.m1 N 0.763
Medtr7g104960 Medicago truncatula Medtr7g104960 N 0.856
Medtr5g095270 Medicago truncatula Medtr5g095270 N 0.700
mgf019210m Mimulus guttatus mgf019210m N 0.763
mgf012484m Mimulus guttatus mgf012484m N 0.734
mgf005672m Mimulus guttatus mgf005672m N 0.734
mgf002509m Mimulus guttatus mgf002509m N 0.734
BGIOSIBCE001249 Oryza indica BGIOSIBCE001249 N 0.714
LOC_Os01g16090 Oryza sativa LOC_Os01g16090 N 0.714
B9IHG4_POPTR Populus trichocarpa POPTR_0016s02440 N 0.813
B9HDH2_POPTR Populus trichocarpa POPTR_0006s02650 N 0.835
ppa004648m Prunus persica ppa004648m N 0.856
30006.m000276 Ricinus communis 30006.m000276 N 0.842
30099.m001684 Ricinus communis 30099.m001684 N 0.835
SB03G010380 Sorghum bicolor Sb03g010380 N 0.705
GSVIVG00037491001 Vitis vinifera GSVIVG00037491001 N 0.806
GRMZM2G132465 Zea mays GRMZM2G132465 N 0.741