AT2G41060 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT2G41060-TAIR-G T32708_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT2G41060.1-P RRM 130 197
AT2G41060.1-P RRM 229 298
AT2G41060.2-P RRM 130 197
AT2G41060.2-P RRM 229 298

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002879859.1 Arabidopsis lyrata scaffold_402914.1 N 0.957
XM_002878068.1 Arabidopsis lyrata fgenesh2_kg.5__2117__AT3G56860.3 N 0.842
UBA2A Arabidopsis thaliana AT3G56860-TAIR-G N 0.842
Glyma19g30250.1 Glycine max Glyma19g30250.1 N 0.827
Glyma03g27290.1 Glycine max Glyma03g27290.1 N 0.820
MDP0000218409 Malus x domestica MDP0000218409 N 0.813
Cucsa.250370 Cucumis sativus Cucsa.250370 N 0.813
ppa004648m Prunus persica ppa004648m N 0.813
MDP0000905699 Malus x domestica MDP0000905699 N 0.813
B9HDH2_POPTR Populus trichocarpa POPTR_0006s02650 N 0.813
B9IHG4_POPTR Populus trichocarpa POPTR_0016s02440 N 0.806
30099.m001684 Ricinus communis 30099.m001684 N 0.791
30006.m000276 Ricinus communis 30006.m000276 N 0.791
MDP0000792725 Malus x domestica MDP0000792725 N 0.784
MDP0000381936 Malus x domestica MDP0000381936 N 0.784
Medtr7g104960 Medicago truncatula Medtr7g104960 N 0.784
cassava8977.m1 Manihot esculenta cassava8977.m1 N 0.784
GSVIVG00037491001 Vitis vinifera GSVIVG00037491001 N 0.777
cassava22354.valid.m1 Manihot esculenta cassava22354.valid.m1 N 0.770
cassava22355.valid.m1 Manihot esculenta cassava22355.valid.m1 N 0.770
cassava6906.valid.m1 Manihot esculenta cassava6906.valid.m1 N 0.770
cassava22353.valid.m1 Manihot esculenta cassava22353.valid.m1 N 0.770
mgf005672m Mimulus guttatus mgf005672m N 0.763
mgf002509m Mimulus guttatus mgf002509m N 0.763
mgf012484m Mimulus guttatus mgf012484m N 0.763
cassava22358.valid.m1 Manihot esculenta cassava22358.valid.m1 N 0.748
PK27017.1 Cannabis sativa PK27017.1 N 0.748
cassava22357.valid.m1 Manihot esculenta cassava22357.valid.m1 N 0.748
Glyma14g04480.1 Glycine max Glyma14g04480.1 N 0.743
PK11606.1 Cannabis sativa PK11606.1 N 0.743
GRMZM2G132465 Zea mays GRMZM2G132465 N 0.741
Glyma02g44330.1 Glycine max Glyma02g44330.1 N 0.736
chr2.CM0031.350.nc Lotus japonicus chr2.CM0031.350.nc N 0.736
Medtr5g095270 Medicago truncatula Medtr5g095270 N 0.729
BGIOSIBCE001249 Oryza indica BGIOSIBCE001249 N 0.721
BRADI2G09820 Brachypodium distachyon BRADI2G09820 N 0.721
LOC_Os01g16090 Oryza sativa LOC_Os01g16090 N 0.721
mgf019210m Mimulus guttatus mgf019210m N 0.719
SB03G010380 Sorghum bicolor Sb03g010380 N 0.712