Cucsa.250370 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.250370 T49606_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.250370.1 RRM 169 237
Cucsa.250370.1 RRM 269 338

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30099.m001684 Ricinus communis 30099.m001684 N 0.878
ppa004648m Prunus persica ppa004648m N 0.878
MDP0000218409 Malus x domestica MDP0000218409 N 0.871
MDP0000905699 Malus x domestica MDP0000905699 N 0.871
30006.m000276 Ricinus communis 30006.m000276 N 0.863
B9HDH2_POPTR Populus trichocarpa POPTR_0006s02650 N 0.863
MDP0000381936 Malus x domestica MDP0000381936 N 0.856
MDP0000792725 Malus x domestica MDP0000792725 N 0.856
B9IHG4_POPTR Populus trichocarpa POPTR_0016s02440 N 0.856
cassava8977.m1 Manihot esculenta cassava8977.m1 N 0.856
Glyma19g30250.1 Glycine max Glyma19g30250.1 N 0.849
cassava6906.valid.m1 Manihot esculenta cassava6906.valid.m1 N 0.842
Glyma03g27290.1 Glycine max Glyma03g27290.1 N 0.835
UBA2A Arabidopsis thaliana AT3G56860-TAIR-G N 0.827
XM_002878068.1 Arabidopsis lyrata fgenesh2_kg.5__2117__AT3G56860.3 N 0.827
XM_002879859.1 Arabidopsis lyrata scaffold_402914.1 N 0.820
PK27017.1 Cannabis sativa PK27017.1 N 0.820
Medtr7g104960 Medicago truncatula Medtr7g104960 N 0.820
AT2G41060 Arabidopsis thaliana AT2G41060-TAIR-G N 0.813
GSVIVG00037491001 Vitis vinifera GSVIVG00037491001 N 0.799
cassava22355.valid.m1 Manihot esculenta cassava22355.valid.m1 N 0.784
cassava22354.valid.m1 Manihot esculenta cassava22354.valid.m1 N 0.784
cassava22353.valid.m1 Manihot esculenta cassava22353.valid.m1 N 0.784
Glyma14g04480.1 Glycine max Glyma14g04480.1 N 0.779
Glyma02g44330.1 Glycine max Glyma02g44330.1 N 0.779
PK11606.1 Cannabis sativa PK11606.1 N 0.771
cassava22358.valid.m1 Manihot esculenta cassava22358.valid.m1 N 0.770
cassava22357.valid.m1 Manihot esculenta cassava22357.valid.m1 N 0.770
mgf012484m Mimulus guttatus mgf012484m N 0.763
mgf005672m Mimulus guttatus mgf005672m N 0.763
mgf002509m Mimulus guttatus mgf002509m N 0.763
Medtr5g095270 Medicago truncatula Medtr5g095270 N 0.750
GRMZM2G132465 Zea mays GRMZM2G132465 N 0.748
chr2.CM0031.350.nc Lotus japonicus chr2.CM0031.350.nc N 0.736
BGIOSIBCE001249 Oryza indica BGIOSIBCE001249 N 0.729
LOC_Os01g16090 Oryza sativa LOC_Os01g16090 N 0.729
mgf019210m Mimulus guttatus mgf019210m N 0.727
SB03G010380 Sorghum bicolor Sb03g010380 N 0.719
ppa023522m Prunus persica ppa023522m N 0.709
BRADI2G09820 Brachypodium distachyon BRADI2G09820 N 0.707