MDP0000218409 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000218409 T57445_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000218409 RRM 282 350
MDP0000218409 RRM 388 457

Links

Other RRM family RBPs
Other Malus x domestica RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000905699 Malus x domestica MDP0000905699 N 1.000
ppa004648m Prunus persica ppa004648m N 0.964
MDP0000381936 Malus x domestica MDP0000381936 N 0.950
MDP0000792725 Malus x domestica MDP0000792725 N 0.950
30006.m000276 Ricinus communis 30006.m000276 N 0.871
30099.m001684 Ricinus communis 30099.m001684 N 0.871
Cucsa.250370 Cucumis sativus Cucsa.250370 N 0.871
UBA2A Arabidopsis thaliana AT3G56860-TAIR-G N 0.863
XM_002878068.1 Arabidopsis lyrata fgenesh2_kg.5__2117__AT3G56860.3 N 0.863
Glyma19g30250.1 Glycine max Glyma19g30250.1 N 0.856
B9IHG4_POPTR Populus trichocarpa POPTR_0016s02440 N 0.849
B9HDH2_POPTR Populus trichocarpa POPTR_0006s02650 N 0.842
Glyma03g27290.1 Glycine max Glyma03g27290.1 N 0.842
cassava8977.m1 Manihot esculenta cassava8977.m1 N 0.835
Medtr7g104960 Medicago truncatula Medtr7g104960 N 0.827
PK27017.1 Cannabis sativa PK27017.1 N 0.827
XM_002879859.1 Arabidopsis lyrata scaffold_402914.1 N 0.827
cassava6906.valid.m1 Manihot esculenta cassava6906.valid.m1 N 0.820
AT2G41060 Arabidopsis thaliana AT2G41060-TAIR-G N 0.813
GSVIVG00037491001 Vitis vinifera GSVIVG00037491001 N 0.813
ppa023522m Prunus persica ppa023522m N 0.788
cassava22358.valid.m1 Manihot esculenta cassava22358.valid.m1 N 0.777
cassava22353.valid.m1 Manihot esculenta cassava22353.valid.m1 N 0.777
cassava22357.valid.m1 Manihot esculenta cassava22357.valid.m1 N 0.777
cassava22354.valid.m1 Manihot esculenta cassava22354.valid.m1 N 0.777
cassava22355.valid.m1 Manihot esculenta cassava22355.valid.m1 N 0.777
mgf005672m Mimulus guttatus mgf005672m N 0.770
mgf012484m Mimulus guttatus mgf012484m N 0.770
mgf002509m Mimulus guttatus mgf002509m N 0.770
Glyma14g04480.1 Glycine max Glyma14g04480.1 N 0.757
Glyma02g44330.1 Glycine max Glyma02g44330.1 N 0.757
mgf019210m Mimulus guttatus mgf019210m N 0.755
chr2.CM0031.350.nc Lotus japonicus chr2.CM0031.350.nc N 0.743
GRMZM2G132465 Zea mays GRMZM2G132465 N 0.741
PK11606.1 Cannabis sativa PK11606.1 N 0.736
Medtr5g095270 Medicago truncatula Medtr5g095270 N 0.729
BGIOSIBCE001249 Oryza indica BGIOSIBCE001249 N 0.714
LOC_Os01g16090 Oryza sativa LOC_Os01g16090 N 0.714