XM_002879859.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 scaffold_402914.1 T46125_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_402914.1 RRM 125 192
scaffold_402914.1 RRM 224 293

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT2G41060 Arabidopsis thaliana AT2G41060-TAIR-G N 0.957
UBA2A Arabidopsis thaliana AT3G56860-TAIR-G N 0.878
XM_002878068.1 Arabidopsis lyrata fgenesh2_kg.5__2117__AT3G56860.3 N 0.878
MDP0000218409 Malus x domestica MDP0000218409 N 0.827
ppa004648m Prunus persica ppa004648m N 0.827
Glyma19g30250.1 Glycine max Glyma19g30250.1 N 0.827
MDP0000905699 Malus x domestica MDP0000905699 N 0.827
Cucsa.250370 Cucumis sativus Cucsa.250370 N 0.820
Glyma03g27290.1 Glycine max Glyma03g27290.1 N 0.820
B9HDH2_POPTR Populus trichocarpa POPTR_0006s02650 N 0.813
30099.m001684 Ricinus communis 30099.m001684 N 0.806
30006.m000276 Ricinus communis 30006.m000276 N 0.806
B9IHG4_POPTR Populus trichocarpa POPTR_0016s02440 N 0.806
MDP0000792725 Malus x domestica MDP0000792725 N 0.799
MDP0000381936 Malus x domestica MDP0000381936 N 0.799
Medtr7g104960 Medicago truncatula Medtr7g104960 N 0.799
cassava8977.m1 Manihot esculenta cassava8977.m1 N 0.791
GSVIVG00037491001 Vitis vinifera GSVIVG00037491001 N 0.791
mgf012484m Mimulus guttatus mgf012484m N 0.770
cassava22355.valid.m1 Manihot esculenta cassava22355.valid.m1 N 0.770
cassava6906.valid.m1 Manihot esculenta cassava6906.valid.m1 N 0.770
mgf002509m Mimulus guttatus mgf002509m N 0.770
mgf005672m Mimulus guttatus mgf005672m N 0.770
cassava22353.valid.m1 Manihot esculenta cassava22353.valid.m1 N 0.770
cassava22354.valid.m1 Manihot esculenta cassava22354.valid.m1 N 0.770
cassava22357.valid.m1 Manihot esculenta cassava22357.valid.m1 N 0.763
PK27017.1 Cannabis sativa PK27017.1 N 0.763
cassava22358.valid.m1 Manihot esculenta cassava22358.valid.m1 N 0.763
PK11606.1 Cannabis sativa PK11606.1 N 0.750
GRMZM2G132465 Zea mays GRMZM2G132465 N 0.748
BGIOSIBCE001249 Oryza indica BGIOSIBCE001249 N 0.743
LOC_Os01g16090 Oryza sativa LOC_Os01g16090 N 0.743
Glyma02g44330.1 Glycine max Glyma02g44330.1 N 0.736
chr2.CM0031.350.nc Lotus japonicus chr2.CM0031.350.nc N 0.736
mgf019210m Mimulus guttatus mgf019210m N 0.734
Medtr5g095270 Medicago truncatula Medtr5g095270 N 0.729
Glyma14g04480.1 Glycine max Glyma14g04480.1 N 0.729
SB03G010380 Sorghum bicolor Sb03g010380 N 0.719
BRADI2G09820 Brachypodium distachyon BRADI2G09820 N 0.714