cassava6906.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava6906.valid.m1 T49456_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava6906.valid.m1 RRM 132 200
cassava6906.valid.m1 RRM 230 299

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava8977.m1 Manihot esculenta cassava8977.m1 N 0.914
30099.m001684 Ricinus communis 30099.m001684 N 0.842
B9HDH2_POPTR Populus trichocarpa POPTR_0006s02650 N 0.842
Cucsa.250370 Cucumis sativus Cucsa.250370 N 0.842
B9IHG4_POPTR Populus trichocarpa POPTR_0016s02440 N 0.827
MDP0000905699 Malus x domestica MDP0000905699 N 0.820
PK27017.1 Cannabis sativa PK27017.1 N 0.820
MDP0000218409 Malus x domestica MDP0000218409 N 0.820
30006.m000276 Ricinus communis 30006.m000276 N 0.820
ppa004648m Prunus persica ppa004648m N 0.820
XM_002878068.1 Arabidopsis lyrata fgenesh2_kg.5__2117__AT3G56860.3 N 0.799
UBA2A Arabidopsis thaliana AT3G56860-TAIR-G N 0.799
Glyma03g27290.1 Glycine max Glyma03g27290.1 N 0.791
MDP0000792725 Malus x domestica MDP0000792725 N 0.791
MDP0000381936 Malus x domestica MDP0000381936 N 0.791
Glyma19g30250.1 Glycine max Glyma19g30250.1 N 0.791
Medtr7g104960 Medicago truncatula Medtr7g104960 N 0.777
XM_002879859.1 Arabidopsis lyrata scaffold_402914.1 N 0.770
AT2G41060 Arabidopsis thaliana AT2G41060-TAIR-G N 0.770
GSVIVG00037491001 Vitis vinifera GSVIVG00037491001 N 0.763
cassava22354.valid.m1 Manihot esculenta cassava22354.valid.m1 N 0.741
cassava22353.valid.m1 Manihot esculenta cassava22353.valid.m1 N 0.741
GRMZM2G132465 Zea mays GRMZM2G132465 N 0.741
cassava22355.valid.m1 Manihot esculenta cassava22355.valid.m1 N 0.741
mgf005672m Mimulus guttatus mgf005672m N 0.727
mgf012484m Mimulus guttatus mgf012484m N 0.727
cassava22358.valid.m1 Manihot esculenta cassava22358.valid.m1 N 0.727
cassava22357.valid.m1 Manihot esculenta cassava22357.valid.m1 N 0.727
mgf002509m Mimulus guttatus mgf002509m N 0.727
SB03G010380 Sorghum bicolor Sb03g010380 N 0.719
BRADI2G09820 Brachypodium distachyon BRADI2G09820 N 0.714
BGIOSIBCE001249 Oryza indica BGIOSIBCE001249 N 0.714
LOC_Os01g16090 Oryza sativa LOC_Os01g16090 N 0.714
mgf019210m Mimulus guttatus mgf019210m N 0.705
Medtr5g095270 Medicago truncatula Medtr5g095270 N 0.700