XM_002894385.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 scaffold_105150.1 T46102_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_105150.1 RRM 77 146
scaffold_105150.1 RRM 170 239

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002882862.1 Arabidopsis lyrata fgenesh2_kg.3__1628__AT3G15010.2 N 0.893
AT3G15010 Arabidopsis thaliana AT3G15010-TAIR-G N 0.900
PK03611.1 Cannabis sativa PK03611.1 N 0.729
PK28408.1 Cannabis sativa PK28408.1 N 0.743
Cucsa.273510 Cucumis sativus Cucsa.273510 N 0.771
Glyma12g19050.1 Glycine max Glyma12g19050.1 N 0.771
Glyma06g33940.1 Glycine max Glyma06g33940.1 N 0.764
chr3.CM0282.340.nc Lotus japonicus chr3.CM0282.340.nc N 0.779
LjT18N19.10.nd Lotus japonicus LjT18N19.10.nd N 0.707
MDP0000250519 Malus x domestica MDP0000250519 N 0.757
MDP0000709988 Malus x domestica MDP0000709988 N 0.729
MDP0000596919 Malus x domestica MDP0000596919 N 0.757
MDP0000410930 Malus x domestica MDP0000410930 N 0.736
MDP0000575061 Malus x domestica MDP0000575061 N 0.736
mgf018937m Mimulus guttatus mgf018937m N 0.732
B9GGV7_POPTR Populus trichocarpa POPTR_0001s38640 N 0.786
ppa005857m Prunus persica ppa005857m N 0.771
29900.m001607 Ricinus communis 29900.m001607 N 0.700
SB03G027820 Sorghum bicolor Sb03g027820 N 0.700