CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cassava28996.valid.m1
(
Manihot esculenta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
cassava28996.valid.m1
T49257_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava28996.valid.m1
RRM
77
146
LFIRGLSTNTTTETIRSLFASYGELEEAVVIFDKNTGKSKGFGFITFKHVDGALIALKEPSKKIDGRMTV
cassava28996.valid.m1
RRM
169
238
IYVGNVPYDIPSERLLSFFLTYGEIEEGPLGFDKATGKSKGFAFIIYKTEEAAKAAIADTVKMIDGHQIL
Links
Other
RRM
family RBPs
Other
Manihot esculenta
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PCBP4
Anolis carolinensis
ENSACAG00000011701
I
0.000
PCBP4_BOVIN
Bos taurus
ENSBTAG00000018622
I
0.000
A6MK33_CALJA
Callithrix jacchus
ENSCJAG00000005783
I
0.000
PCBP4
Canis familiaris
ENSCAFG00000010019
I
0.000
PCBP4
Cavia porcellus
ENSCPOG00000014617
I
0.000
Pcbp4
Dipodomys ordii
ENSDORG00000000573
N
0.000
LOC100060660
Equus caballus
ENSECAG00000024218
I
0.000
PCBP4
Gorilla gorilla
ENSGGOG00000012474
I
0.000
PCBP4
Homo sapiens
ENSG00000090097
I
0.000
PCBP2
Homo sapiens
ENSG00000197111
D
0.000
PCBP4
Macaca mulatta
ENSMMUG00000022205
I
0.000
PCBP4
Monodelphis domestica
ENSMODG00000011790
I
0.000
Pcbp4
Mus musculus
ENSMUSG00000023495
I
0.000
PCBP4
Ornithorhynchus anatinus
ENSOANG00000014110
I
0.000
PCBP4
Oryctolagus cuniculus
ENSOCUG00000025336
I
0.000
PCBP4
Pan troglodytes
ENSPTRG00000014983
I
0.000
ENSPPYG00000013822
Pongo pygmaeus
ENSPPYG00000013822
I
0.000
Pcbp4
Rattus norvegicus
ENSRNOG00000012406
I
0.000
D3ZWQ9_RAT
Rattus norvegicus
ENSRNOG00000038946
N
0.000
PCBP4
Taeniopygia guttata
ENSTGUG00000006393
I
0.000