XP_781203.2 (Strongylocentrotus purpuratus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 XP_781203.2 T59207_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snRNP70K
M134_0.6 		Drosophila melanogaster AUCAHG RNAcompete
Ray et al.(2013)
RNCMPT00143 		0.803
SNRNP70
M068_0.6 		Homo sapiens RWUCAAG RNAcompete
Ray et al.(2013)
RNCMPT00070 		0.789
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_781203.2 RRM 16 86

Links

Other RRM family RBPs
Other Strongylocentrotus purpuratus RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.000
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.000
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.000
PK21780.1 Cannabis sativa PK21780.1 N 0.000
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.000
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.000
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.000
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.000
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.000
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.000
MDP0000185506 Malus x domestica MDP0000185506 N 0.000
MDP0000916880 Malus x domestica MDP0000916880 N 0.000
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.000
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.000
mgf016428m Mimulus guttatus mgf016428m N 0.000
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.000
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.000
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.000
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.000
PITG_10282 Phytophthora infestans PITG_10282 N 0.000
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.000
s_454910 Phytophthora sojae s_454910 N 0.000
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.000
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.000
ppa013407m Prunus persica ppa013407m N 0.000
ppa013405m Prunus persica ppa013405m N 0.000
29868.m000351 Ricinus communis 29868.m000351 N 0.000
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.000
SB01G003790 Sorghum bicolor Sb01g003790 N 0.000
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.000
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.000
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.000
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.000
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.000