Medtr5g096400 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr5g096400 T54565_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr5g096400.1 RRM 21 88

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

143 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 1.000
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.985
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.985
mgf016428m Mimulus guttatus mgf016428m N 0.985
PK21780.1 Cannabis sativa PK21780.1 N 0.942
MDP0000185506 Malus x domestica MDP0000185506 N 0.942
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.942
ppa013407m Prunus persica ppa013407m N 0.942
29868.m000351 Ricinus communis 29868.m000351 N 0.942
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.942
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.942
ppa013405m Prunus persica ppa013405m N 0.942
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.942
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.928
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.928
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.926
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.926
MDP0000916880 Malus x domestica MDP0000916880 N 0.899
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.899
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.899
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.899
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.884
SB01G003790 Sorghum bicolor Sb01g003790 N 0.884
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.884
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.870
PITG_10282 Phytophthora infestans PITG_10282 N 0.868
s_454910 Phytophthora sojae s_454910 N 0.868
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.868
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.855
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.855
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.855
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.853
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.841
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.838
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.826
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.826
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.824
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.812
PHUM617060 Pediculus humanus PHUM617060 N 0.812
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.812
XM_002883819.1 Arabidopsis lyrata scaffold_303681.1 N 0.809
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.809
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.797
AGAP002780 Anopheles gambiae AGAP002780 N 0.797
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.797
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.797
AAEL005909 Aedes aegypti AAEL005909 N 0.797
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.797
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.797
CG13298 Drosophila melanogaster FBgn0035692 N 0.794
GE20495 Drosophila yakuba FBgn0068445 N 0.794
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.794
GG14070 Drosophila erecta FBgn0106332 N 0.794
GI13232 Drosophila mojavensis FBgn0135989 N 0.794
GM13852 Drosophila sechellia FBgn0168783 N 0.794
GL22529 Drosophila persimilis FBgn0160121 N 0.794
GD13137 Drosophila simulans FBgn0184859 N 0.794
GJ12004 Drosophila virilis FBgn0199256 N 0.794
GF10910 Drosophila ananassae FBgn0087950 N 0.794
GH16287 Drosophila grimshawi FBgn0123758 N 0.794
GK17258 Drosophila willistoni FBgn0219257 N 0.794
ISCW024082 Ixodes scapularis ISCW024082 N 0.783
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.783
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.783
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.783
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.783
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.783
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.783
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.783
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.768
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.768
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.768
estExt_fgenesh2_kg.C_50105 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_50105 N 0.768
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.768
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.768
LOAG_04189 Loa loa LOAG_04189 N 0.765
eugene.1500010066 Ostreococcus lucimarinus eugene.1500010066 N 0.754
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.754
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.754
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.754
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.754
LOC100056247 Equus caballus ENSECAG00000015618 N 0.754
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.754
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.754
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.754
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.754
SF3B14 Gallus gallus ENSGALG00000016501 N 0.754
AC008073.5 Homo sapiens ENSG00000115128 N 0.754
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.754
sf3b14 Danio rerio ENSDARG00000009753 N 0.754
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.754
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.754
1600010087 Ostreococcus tauri 1600010087 N 0.754
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.754
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.754
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.754
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.754
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.754
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.754
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.754
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.754
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.754
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.754
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.754
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.754
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.754
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.754
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.754
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.754
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.754
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.754
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.754
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.754
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.750
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.750
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.750
32497 Aureococcus anophagefferens 32497 N 0.747
Smp_032060 Schistosoma mansoni Smp_032060 N 0.739
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.739
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.739
AAH57709 Xenopus laevis AAH57709 N 0.739
Minc01156 Meloidogyne incognita Minc01156 N 0.739
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.739
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.739
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.739
TGME49_105010 Toxoplasma gondii TGME49_105010 N 0.735
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.735
NCLIV_001260 Neospora caninum NCLIV_001260 N 0.735
TGGT1_042490 Toxoplasma gondii TGGT1_042490 N 0.735
TGVEG_106330 Toxoplasma gondii TGVEG_106330 N 0.735
TA13725 Theileria annulata TA13725 N 0.725
PPA24922 Pristionchus pacificus PPA24922 N 0.725
68671 Helobdella robusta 68671 N 0.725
CJA01433 Caenorhabditis japonica CJA01433 N 0.725
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.721
160.m00066 Tetrahymena thermophila 160.m00066 N 0.721
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.721
EDO06533.1 Babesia bovis EDO06533.1 N 0.710
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.710
CRE22109 Caenorhabditis remanei CRE22109 N 0.710
CBN08400 Caenorhabditis brenneri CBN08400 N 0.710
CBG06987 Caenorhabditis briggsae CBG06987 N 0.710
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.710