fgenesh1_pm.C_scaffold_108000003 (Phytophthora ramorum)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.C_scaffold_108000003 T52064_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_108000003 RRM 20 87

Links

Other RRM family RBPs
Other Phytophthora ramorum RBPs

137 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.971
s_454910 Phytophthora sojae s_454910 N 0.971
PITG_10282 Phytophthora infestans PITG_10282 N 0.971
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.884
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.855
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.855
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.855
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.855
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.853
mgf016428m Mimulus guttatus mgf016428m N 0.853
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.853
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.853
ppa013407m Prunus persica ppa013407m N 0.841
ppa013405m Prunus persica ppa013405m N 0.841
PK21780.1 Cannabis sativa PK21780.1 N 0.841
29868.m000351 Ricinus communis 29868.m000351 N 0.841
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.841
MDP0000185506 Malus x domestica MDP0000185506 N 0.841
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.841
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.841
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.841
SB01G003790 Sorghum bicolor Sb01g003790 N 0.841
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.841
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.838
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.838
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.826
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.826
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.824
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.824
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.812
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.812
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.809
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.809
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.797
MDP0000916880 Malus x domestica MDP0000916880 N 0.797
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.797
ISCW024082 Ixodes scapularis ISCW024082 N 0.797
PHUM617060 Pediculus humanus PHUM617060 N 0.797
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.797
32497 Aureococcus anophagefferens 32497 N 0.787
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.783
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.783
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.783
AGAP002780 Anopheles gambiae AGAP002780 N 0.783
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.783
AAEL005909 Aedes aegypti AAEL005909 N 0.783
GI13232 Drosophila mojavensis FBgn0135989 N 0.779
CG13298 Drosophila melanogaster FBgn0035692 N 0.779
GL22529 Drosophila persimilis FBgn0160121 N 0.779
GD13137 Drosophila simulans FBgn0184859 N 0.779
GK17258 Drosophila willistoni FBgn0219257 N 0.779
GJ12004 Drosophila virilis FBgn0199256 N 0.779
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.779
GM13852 Drosophila sechellia FBgn0168783 N 0.779
GE20495 Drosophila yakuba FBgn0068445 N 0.779
GF10910 Drosophila ananassae FBgn0087950 N 0.779
GH16287 Drosophila grimshawi FBgn0123758 N 0.779
GG14070 Drosophila erecta FBgn0106332 N 0.779
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.768
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.768
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.768
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.768
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.768
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.768
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.768
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.768
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.768
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.768
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.768
NCLIV_001260 Neospora caninum NCLIV_001260 N 0.765
TGGT1_042490 Toxoplasma gondii TGGT1_042490 N 0.765
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.765
TGME49_105010 Toxoplasma gondii TGME49_105010 N 0.765
TGVEG_106330 Toxoplasma gondii TGVEG_106330 N 0.765
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.754
estExt_fgenesh2_kg.C_50105 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_50105 N 0.754
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.754
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.754
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.754
EDO06533.1 Babesia bovis EDO06533.1 N 0.754
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.754
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.750
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.750
160.m00066 Tetrahymena thermophila 160.m00066 N 0.750
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.739
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.739
PVX_123875 Plasmodium vivax PVX_123875 N 0.739
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.739
PFL1200c Plasmodium falciparum PFL1200c N 0.739
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.739
LOC100056247 Equus caballus ENSECAG00000015618 N 0.739
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.739
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.739
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.739
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.739
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.739
SF3B14 Gallus gallus ENSGALG00000016501 N 0.739
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.739
sf3b14 Danio rerio ENSDARG00000009753 N 0.739
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.739
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.739
TA13725 Theileria annulata TA13725 N 0.739
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.739
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.739
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.739
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.739
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.739
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.739
AC008073.5 Homo sapiens ENSG00000115128 N 0.739
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.739
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.739
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.739
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.739
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.739
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.739
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.739
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.739
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.739
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.739
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.739
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.739
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.739
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.739
LOAG_04189 Loa loa LOAG_04189 N 0.735
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.735
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.735
AAH57709 Xenopus laevis AAH57709 N 0.725
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.725
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.725
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.725
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.725
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.721
Smp_032060 Schistosoma mansoni Smp_032060 N 0.710
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.710
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.710
68671 Helobdella robusta 68671 N 0.710
XM_002883819.1 Arabidopsis lyrata scaffold_303681.1 N 0.706