B9HNI9_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0009s07180 T45579_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s07180.1 RRM 22 89

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

135 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.985
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.985
29868.m000351 Ricinus communis 29868.m000351 N 0.985
ppa013405m Prunus persica ppa013405m N 0.985
MDP0000185506 Malus x domestica MDP0000185506 N 0.985
ppa013407m Prunus persica ppa013407m N 0.985
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.985
PK21780.1 Cannabis sativa PK21780.1 N 0.985
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.971
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.956
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.941
SB01G003790 Sorghum bicolor Sb01g003790 N 0.941
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.941
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.941
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.928
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.928
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.928
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.926
MDP0000916880 Malus x domestica MDP0000916880 N 0.926
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.926
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.926
mgf016428m Mimulus guttatus mgf016428m N 0.913
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.913
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.912
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.912
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.912
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.897
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.882
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.870
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.870
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.853
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.841
PITG_10282 Phytophthora infestans PITG_10282 N 0.841
s_454910 Phytophthora sojae s_454910 N 0.841
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.826
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.824
eugene.1500010066 Ostreococcus lucimarinus eugene.1500010066 N 0.809
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.797
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.794
PHUM617060 Pediculus humanus PHUM617060 N 0.794
ISCW024082 Ixodes scapularis ISCW024082 N 0.794
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.794
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.783
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.783
AGAP002780 Anopheles gambiae AGAP002780 N 0.779
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.779
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.779
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.779
AAEL005909 Aedes aegypti AAEL005909 N 0.779
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.779
1600010087 Ostreococcus tauri 1600010087 N 0.779
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.779
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.779
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.779
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.779
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.779
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.779
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.768
SF3B14 Gallus gallus ENSGALG00000016501 N 0.765
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.765
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.765
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.765
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.765
AC008073.5 Homo sapiens ENSG00000115128 N 0.765
sf3b14 Danio rerio ENSDARG00000009753 N 0.765
LOC100056247 Equus caballus ENSECAG00000015618 N 0.765
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.765
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.765
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.765
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.765
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.765
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.765
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.765
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.765
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.765
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.765
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.765
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.765
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.765
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.765
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.765
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.765
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.765
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.765
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.765
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.765
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.765
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.765
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.765
Smp_032060 Schistosoma mansoni Smp_032060 N 0.765
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.765
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.765
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.765
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.765
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.765
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.765
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.765
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.765
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.765
32497 Aureococcus anophagefferens 32497 N 0.757
GI13232 Drosophila mojavensis FBgn0135989 N 0.754
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.754
GL22529 Drosophila persimilis FBgn0160121 N 0.754
GH16287 Drosophila grimshawi FBgn0123758 N 0.754
GE20495 Drosophila yakuba FBgn0068445 N 0.754
GK17258 Drosophila willistoni FBgn0219257 N 0.754
GF10910 Drosophila ananassae FBgn0087950 N 0.754
XM_002883819.1 Arabidopsis lyrata scaffold_303681.1 N 0.754
GJ12004 Drosophila virilis FBgn0199256 N 0.754
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.754
GG14070 Drosophila erecta FBgn0106332 N 0.754
GD13137 Drosophila simulans FBgn0184859 N 0.754
CG13298 Drosophila melanogaster FBgn0035692 N 0.754
GM13852 Drosophila sechellia FBgn0168783 N 0.754
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.750
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.750
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.750
AAH57709 Xenopus laevis AAH57709 N 0.750
estExt_fgenesh2_kg.C_50105 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_50105 N 0.725
LOAG_04189 Loa loa LOAG_04189 N 0.725
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.721
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.721
Minc01156 Meloidogyne incognita Minc01156 N 0.721
EDO06533.1 Babesia bovis EDO06533.1 N 0.721
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.710
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.710
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.710
160.m00066 Tetrahymena thermophila 160.m00066 N 0.710
PFL1200c Plasmodium falciparum PFL1200c N 0.706
CJA01433 Caenorhabditis japonica CJA01433 N 0.706
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.706
PVX_123875 Plasmodium vivax PVX_123875 N 0.706
68671 Helobdella robusta 68671 N 0.706
PPA24922 Pristionchus pacificus PPA24922 N 0.706
TA13725 Theileria annulata TA13725 N 0.706