e_gw1.13.49.1 (Emiliania huxleyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.13.49.1 T49763_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.13.49.1 RRM 20 87

Links

Other RRM family RBPs
Other Emiliania huxleyi RBPs

149 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.899
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.884
PITG_10282 Phytophthora infestans PITG_10282 N 0.882
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.882
s_454910 Phytophthora sojae s_454910 N 0.882
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.855
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.855
PHUM617060 Pediculus humanus PHUM617060 N 0.855
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.855
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.855
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.855
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.855
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.855
GM13852 Drosophila sechellia FBgn0168783 N 0.853
GD13137 Drosophila simulans FBgn0184859 N 0.853
GK17258 Drosophila willistoni FBgn0219257 N 0.853
GJ12004 Drosophila virilis FBgn0199256 N 0.853
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.853
GF10910 Drosophila ananassae FBgn0087950 N 0.853
CG13298 Drosophila melanogaster FBgn0035692 N 0.853
GG14070 Drosophila erecta FBgn0106332 N 0.853
GH16287 Drosophila grimshawi FBgn0123758 N 0.853
GI13232 Drosophila mojavensis FBgn0135989 N 0.853
GL22529 Drosophila persimilis FBgn0160121 N 0.853
GE20495 Drosophila yakuba FBgn0068445 N 0.853
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.853
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.853
SB01G003790 Sorghum bicolor Sb01g003790 N 0.841
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.841
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.841
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.841
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.841
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.841
mgf016428m Mimulus guttatus mgf016428m N 0.838
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.838
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.838
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.838
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.826
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.826
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.826
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.826
AAEL005909 Aedes aegypti AAEL005909 N 0.826
AGAP002780 Anopheles gambiae AGAP002780 N 0.826
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.826
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.826
ISCW024082 Ixodes scapularis ISCW024082 N 0.826
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.826
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.826
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.824
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.824
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.824
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.824
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.824
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.812
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.812
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.812
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.812
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.812
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.812
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.812
AC008073.5 Homo sapiens ENSG00000115128 N 0.812
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.812
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.812
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.812
SF3B14 Gallus gallus ENSGALG00000016501 N 0.812
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.812
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.812
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.812
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.812
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.812
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.812
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.812
LOC100056247 Equus caballus ENSECAG00000015618 N 0.812
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.812
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.812
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.812
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.812
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.812
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.812
29868.m000351 Ricinus communis 29868.m000351 N 0.812
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.812
MDP0000185506 Malus x domestica MDP0000185506 N 0.812
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.812
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.812
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.812
PK21780.1 Cannabis sativa PK21780.1 N 0.812
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.812
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.812
ppa013405m Prunus persica ppa013405m N 0.812
ppa013407m Prunus persica ppa013407m N 0.812
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.812
sf3b14 Danio rerio ENSDARG00000009753 N 0.812
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.812
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.812
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.812
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.812
LOAG_04189 Loa loa LOAG_04189 N 0.809
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.797
estExt_fgenesh2_kg.C_50105 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_50105 N 0.797
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.797
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.797
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.797
Minc01156 Meloidogyne incognita Minc01156 N 0.797
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.797
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.794
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.794
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.783
68671 Helobdella robusta 68671 N 0.783
PPA24922 Pristionchus pacificus PPA24922 N 0.783
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.783
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.783
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.783
AAH57709 Xenopus laevis AAH57709 N 0.783
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.783
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.779
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.779
32497 Aureococcus anophagefferens 32497 N 0.773
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.768
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.768
TA13725 Theileria annulata TA13725 N 0.768
MDP0000916880 Malus x domestica MDP0000916880 N 0.768
EDO06533.1 Babesia bovis EDO06533.1 N 0.768
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.754
CJA01433 Caenorhabditis japonica CJA01433 N 0.754
PFL1200c Plasmodium falciparum PFL1200c N 0.754
PVX_123875 Plasmodium vivax PVX_123875 N 0.754
CRE22109 Caenorhabditis remanei CRE22109 N 0.754
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.754
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.754
CBG06987 Caenorhabditis briggsae CBG06987 N 0.754
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.754
CBN08400 Caenorhabditis brenneri CBN08400 N 0.754
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.754
Smp_032060 Schistosoma mansoni Smp_032060 N 0.754
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.750
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.750
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.739
PY07239 Plasmodium yoelii PY07239 N 0.739
TGVEG_106330 Toxoplasma gondii TGVEG_106330 N 0.735
TGME49_105010 Toxoplasma gondii TGME49_105010 N 0.735
NCLIV_001260 Neospora caninum NCLIV_001260 N 0.735
TGGT1_042490 Toxoplasma gondii TGGT1_042490 N 0.735
TP02_0539 Theileria parva TP02_0539 N 0.725
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.710
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.710
CMU_001200 Cryptosporidium muris CMU_001200 N 0.710
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.710
XM_002883819.1 Arabidopsis lyrata scaffold_303681.1 N 0.706
160.m00066 Tetrahymena thermophila 160.m00066 N 0.706