estExt_fgenesh2_pg.C_240194 (Selaginella moellendorfii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pg.C_240194 T50831_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_240194 RRM 20 87

Links

Other RRM family RBPs
Other Selaginella moellendorfii RBPs

149 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.971
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.971
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.971
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.956
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.956
29868.m000351 Ricinus communis 29868.m000351 N 0.956
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.956
ppa013407m Prunus persica ppa013407m N 0.956
SB01G003790 Sorghum bicolor Sb01g003790 N 0.956
ppa013405m Prunus persica ppa013405m N 0.956
MDP0000185506 Malus x domestica MDP0000185506 N 0.956
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.956
PK21780.1 Cannabis sativa PK21780.1 N 0.956
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.956
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.941
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.941
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.926
mgf016428m Mimulus guttatus mgf016428m N 0.913
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.899
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.899
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.899
MDP0000916880 Malus x domestica MDP0000916880 N 0.897
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.884
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.884
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.884
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.882
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.882
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.882
PITG_10282 Phytophthora infestans PITG_10282 N 0.870
s_454910 Phytophthora sojae s_454910 N 0.870
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.870
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.868
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.868
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.855
PHUM617060 Pediculus humanus PHUM617060 N 0.853
ISCW024082 Ixodes scapularis ISCW024082 N 0.853
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.841
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.841
AGAP002780 Anopheles gambiae AGAP002780 N 0.838
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.838
AAEL005909 Aedes aegypti AAEL005909 N 0.838
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.838
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.838
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.838
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.824
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.824
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.824
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.824
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.824
GH16287 Drosophila grimshawi FBgn0123758 N 0.812
GI13232 Drosophila mojavensis FBgn0135989 N 0.812
CG13298 Drosophila melanogaster FBgn0035692 N 0.812
GE20495 Drosophila yakuba FBgn0068445 N 0.812
GG14070 Drosophila erecta FBgn0106332 N 0.812
GF10910 Drosophila ananassae FBgn0087950 N 0.812
GL22529 Drosophila persimilis FBgn0160121 N 0.812
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.812
GJ12004 Drosophila virilis FBgn0199256 N 0.812
GM13852 Drosophila sechellia FBgn0168783 N 0.812
GD13137 Drosophila simulans FBgn0184859 N 0.812
GK17258 Drosophila willistoni FBgn0219257 N 0.812
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.809
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.809
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.797
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.794
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.794
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.794
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.794
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.794
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.794
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.794
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.794
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.794
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.794
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.794
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.794
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.794
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.794
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.794
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.794
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.794
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.794
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.794
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.794
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.794
sf3b14 Danio rerio ENSDARG00000009753 N 0.794
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.794
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.794
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.794
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.794
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.794
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.794
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.794
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.794
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.794
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.794
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.794
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.794
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.794
SF3B14 Gallus gallus ENSGALG00000016501 N 0.794
LOC100056247 Equus caballus ENSECAG00000015618 N 0.794
AC008073.5 Homo sapiens ENSG00000115128 N 0.794
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.794
32497 Aureococcus anophagefferens 32497 N 0.784
LOAG_04189 Loa loa LOAG_04189 N 0.783
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.783
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.779
AAH57709 Xenopus laevis AAH57709 N 0.779
Smp_032060 Schistosoma mansoni Smp_032060 N 0.779
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.779
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.779
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.779
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.779
eugene.1500010066 Ostreococcus lucimarinus eugene.1500010066 N 0.779
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.779
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.768
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.768
EDO06533.1 Babesia bovis EDO06533.1 N 0.765
68671 Helobdella robusta 68671 N 0.765
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.765
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.754
XM_002883819.1 Arabidopsis lyrata scaffold_303681.1 N 0.754
PVX_123875 Plasmodium vivax PVX_123875 N 0.750
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.750
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.750
1600010087 Ostreococcus tauri 1600010087 N 0.750
PFL1200c Plasmodium falciparum PFL1200c N 0.750
TA13725 Theileria annulata TA13725 N 0.750
Minc01156 Meloidogyne incognita Minc01156 N 0.750
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.739
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.739
estExt_fgenesh2_kg.C_50105 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_50105 N 0.739
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.739
CJA01433 Caenorhabditis japonica CJA01433 N 0.735
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.735
PPA24922 Pristionchus pacificus PPA24922 N 0.735
TGGT1_042490 Toxoplasma gondii TGGT1_042490 N 0.725
TGME49_105010 Toxoplasma gondii TGME49_105010 N 0.725
TGVEG_106330 Toxoplasma gondii TGVEG_106330 N 0.725
NCLIV_001260 Neospora caninum NCLIV_001260 N 0.725
CBG06987 Caenorhabditis briggsae CBG06987 N 0.721
CRE22109 Caenorhabditis remanei CRE22109 N 0.721
CBN08400 Caenorhabditis brenneri CBN08400 N 0.721
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.721
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.721
160.m00066 Tetrahymena thermophila 160.m00066 N 0.710
PY07239 Plasmodium yoelii PY07239 N 0.706
TP02_0539 Theileria parva TP02_0539 N 0.706
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.706