estExt_fgenesh1_kg.C_20004 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_kg.C_20004 T50406_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_kg.C_20004 RRM 21 88

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

150 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GG14070 Drosophila erecta FBgn0106332 N 0.971
GH16287 Drosophila grimshawi FBgn0123758 N 0.971
GF10910 Drosophila ananassae FBgn0087950 N 0.971
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.971
CG13298 Drosophila melanogaster FBgn0035692 N 0.971
GE20495 Drosophila yakuba FBgn0068445 N 0.971
GL22529 Drosophila persimilis FBgn0160121 N 0.971
GI13232 Drosophila mojavensis FBgn0135989 N 0.971
GJ12004 Drosophila virilis FBgn0199256 N 0.971
GD13137 Drosophila simulans FBgn0184859 N 0.971
GK17258 Drosophila willistoni FBgn0219257 N 0.971
GM13852 Drosophila sechellia FBgn0168783 N 0.971
AAEL005909 Aedes aegypti AAEL005909 N 0.942
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.942
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.942
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.928
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.928
AGAP002780 Anopheles gambiae AGAP002780 N 0.928
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.928
PHUM617060 Pediculus humanus PHUM617060 N 0.928
ISCW024082 Ixodes scapularis ISCW024082 N 0.928
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.928
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.913
LOAG_04189 Loa loa LOAG_04189 N 0.912
sf3b14 Danio rerio ENSDARG00000009753 N 0.899
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.899
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.899
LOC100056247 Equus caballus ENSECAG00000015618 N 0.899
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.899
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.899
AC008073.5 Homo sapiens ENSG00000115128 N 0.899
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.899
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.899
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.899
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.899
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.899
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.899
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.899
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.899
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.899
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.899
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.899
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.899
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.899
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.899
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.899
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.899
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.899
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.899
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.899
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.899
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.899
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.899
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.899
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.899
SF3B14 Gallus gallus ENSGALG00000016501 N 0.899
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.899
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.899
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.899
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.884
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.884
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.884
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.884
AAH57709 Xenopus laevis AAH57709 N 0.884
68671 Helobdella robusta 68671 N 0.884
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.870
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.870
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.870
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.870
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.868
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.853
Minc01156 Meloidogyne incognita Minc01156 N 0.841
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.841
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.838
mgf016428m Mimulus guttatus mgf016428m N 0.838
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.826
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.826
Smp_032060 Schistosoma mansoni Smp_032060 N 0.826
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.826
PPA24922 Pristionchus pacificus PPA24922 N 0.826
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.826
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.826
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.824
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.824
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.824
s_454910 Phytophthora sojae s_454910 N 0.824
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.824
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.824
PITG_10282 Phytophthora infestans PITG_10282 N 0.824
CBG06987 Caenorhabditis briggsae CBG06987 N 0.812
SB01G003790 Sorghum bicolor Sb01g003790 N 0.812
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.812
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.812
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.812
CBN08400 Caenorhabditis brenneri CBN08400 N 0.812
CRE22109 Caenorhabditis remanei CRE22109 N 0.812
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.812
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.812
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.809
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.809
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.797
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.797
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.797
29868.m000351 Ricinus communis 29868.m000351 N 0.797
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.797
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.797
PK21780.1 Cannabis sativa PK21780.1 N 0.797
CJA01433 Caenorhabditis japonica CJA01433 N 0.797
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.797
TA13725 Theileria annulata TA13725 N 0.797
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.797
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.797
MDP0000185506 Malus x domestica MDP0000185506 N 0.797
ppa013405m Prunus persica ppa013405m N 0.797
ppa013407m Prunus persica ppa013407m N 0.797
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.794
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.783
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.783
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.779
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.768
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.768
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.768
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.765
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.765
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.765
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.765
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.754
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.754
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.754
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.754
MDP0000916880 Malus x domestica MDP0000916880 N 0.754
EDO06533.1 Babesia bovis EDO06533.1 N 0.754
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.754
TP02_0539 Theileria parva TP02_0539 N 0.754
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.739
PVX_123875 Plasmodium vivax PVX_123875 N 0.739
PFL1200c Plasmodium falciparum PFL1200c N 0.739
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.739
NCLIV_001260 Neospora caninum NCLIV_001260 N 0.735
32497 Aureococcus anophagefferens 32497 N 0.733
PY07239 Plasmodium yoelii PY07239 N 0.725
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.721
TGVEG_106330 Toxoplasma gondii TGVEG_106330 N 0.721
estExt_fgenesh1_pg.C_120176 Monosiga brevicollis estExt_fgenesh1_pg.C_120176 N 0.721
TGME49_105010 Toxoplasma gondii TGME49_105010 N 0.721
TGGT1_042490 Toxoplasma gondii TGGT1_042490 N 0.721
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.710
estExt_fgenesh2_kg.C_50105 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_50105 N 0.710
XM_002883819.1 Arabidopsis lyrata scaffold_303681.1 N 0.706
SPOG_01516 Schizosaccharomyces cryophilus SPOG_01516 N 0.706