MDP0000916880 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000916880 T57740_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000916880 RRM 21 88

Links

Other RRM family RBPs
Other Malus x domestica RBPs

117 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29868.m000351 Ricinus communis 29868.m000351 N 0.941
PK21780.1 Cannabis sativa PK21780.1 N 0.941
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.941
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.941
ppa013405m Prunus persica ppa013405m N 0.941
ppa013407m Prunus persica ppa013407m N 0.941
MDP0000185506 Malus x domestica MDP0000185506 N 0.941
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.941
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.926
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.926
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.912
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.899
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.899
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.899
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.897
mgf016428m Mimulus guttatus mgf016428m N 0.884
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.884
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.882
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.882
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.868
SB01G003790 Sorghum bicolor Sb01g003790 N 0.868
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.868
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.853
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.841
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.841
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.838
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.838
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.838
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.838
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.824
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.824
s_454910 Phytophthora sojae s_454910 N 0.812
PITG_10282 Phytophthora infestans PITG_10282 N 0.812
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.812
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.797
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.768
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.765
ISCW024082 Ixodes scapularis ISCW024082 N 0.765
PHUM617060 Pediculus humanus PHUM617060 N 0.765
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.765
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.754
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.754
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.750
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.750
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.750
AGAP002780 Anopheles gambiae AGAP002780 N 0.750
AAEL005909 Aedes aegypti AAEL005909 N 0.750
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.750
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.739
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.735
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.735
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.735
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.735
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.735
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.735
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.735
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.735
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.735
eugene.1500010066 Ostreococcus lucimarinus eugene.1500010066 N 0.735
32497 Aureococcus anophagefferens 32497 N 0.730
GJ12004 Drosophila virilis FBgn0199256 N 0.725
GK17258 Drosophila willistoni FBgn0219257 N 0.725
GD13137 Drosophila simulans FBgn0184859 N 0.725
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.725
XM_002883819.1 Arabidopsis lyrata scaffold_303681.1 N 0.725
GE20495 Drosophila yakuba FBgn0068445 N 0.725
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.725
CG13298 Drosophila melanogaster FBgn0035692 N 0.725
GM13852 Drosophila sechellia FBgn0168783 N 0.725
GG14070 Drosophila erecta FBgn0106332 N 0.725
GF10910 Drosophila ananassae FBgn0087950 N 0.725
GI13232 Drosophila mojavensis FBgn0135989 N 0.725
GH16287 Drosophila grimshawi FBgn0123758 N 0.725
GL22529 Drosophila persimilis FBgn0160121 N 0.725
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.721
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.721
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.721
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.721
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.721
Smp_032060 Schistosoma mansoni Smp_032060 N 0.721
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.721
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.706
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.706
sf3b14 Danio rerio ENSDARG00000009753 N 0.706
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.706
LOC100056247 Equus caballus ENSECAG00000015618 N 0.706
AC008073.5 Homo sapiens ENSG00000115128 N 0.706
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.706
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.706
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.706
AAH57709 Xenopus laevis AAH57709 N 0.706
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.706
SF3B14 Gallus gallus ENSGALG00000016501 N 0.706
1600010087 Ostreococcus tauri 1600010087 N 0.706
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.706
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.706
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.706
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.706
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.706
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.706
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.706
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.706
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.706
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.706
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.706
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.706
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.706
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.706
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.706
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.706
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.706
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.706
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.706
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.706
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.706
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.706
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.706