CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BDBG_04724
(
Blastomyces dermatitidis
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
BDBG_04724
T00256_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BDBG_04724T0
CCCH ZF
13
39
QDKVNCSFYYKIGACRHGDRCSRKHVK
BDBG_04724T0
RRM
64
134
NPSQLQNHFDAFYEDFWCEMCKYGELEEVVVCDNNNDHLIGNVYARFKYEDSAQQACDALNSRWYAARPIY
BDBG_04724T0
CCCH ZF
142
168
DFREACCRLNSGEGCVRGGFCNFIHRK
Links
Other
CCCH ZF,RRM
family RBPs
Other
Blastomyces dermatitidis
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CIMG_04462
Coccidioides immitis
CIMG_04462
N
0.976
CPSG_06303
Coccidioides posadasii
CPSG_06303
N
0.976
MGYG_02786
Microsporum gypseum
MGYG_02786
N
0.960
TERG_06877
Trichophyton rubrum
TERG_06877
N
0.960
TESG_04620
Trichophyton tonsurans
TESG_04620
N
0.960
MCYG_05692
Microsporum canis
MCYG_05692
N
0.960
AFUA_3G02380
Aspergillus fumigatus
CADAFUAG00000282
N
0.952
fgenesh1_pg.00771_#_421
Aspergillus carbonarius
fgenesh1_pg.00771_#_421
N
0.952
NFIA_003540
Neosartorya fischeri
CADNFIAG00000551
N
0.952
AFLA_090330
Aspergillus flavus
CADAFLAG00008718
N
0.944
ACLA_061920
Aspergillus clavatus
CADACLAG00005985
N
0.944
ANIA_09362
Aspergillus nidulans
CADANIAG00001149
N
0.944
AO090120000034
Aspergillus oryzae
CADAORAG00011213
N
0.944
estExt_Genewise1Plus.C_51141
Cryphonectria parasitica
estExt_Genewise1Plus.C_51141
N
0.944
ATEG_07467
Aspergillus terreus
CADATEAG00003016
N
0.944
An01g01060
Aspergillus niger
CADANGAG00000104
N
0.944
Pa_1_2890
Podospora anserina
Pa_1_2890
N
0.936
estExt_fgenesh3_kg.C_70195
Neurospora discreta
estExt_fgenesh3_kg.C_70195
N
0.936
NCU03261
Neurospora crassa
NCU03261
N
0.936
estExt_Genewise1Plus.C_50321
Neurospora tetrasperma
estExt_Genewise1Plus.C_50321
N
0.936
MGG_09948
Magnaporthe oryzae
MGG_09948
N
0.928
CHGG_01857
Chaetomium globosum
CHGG_01857
N
0.928
VDBG_04657
Verticillium albo atrum
VDBG_04657
N
0.920
VDAG_04200
Verticillium dahliae
VDAG_04200
N
0.920
GLRG_01478
Colletotrichum graminicola
GLRG_01478
N
0.920
FOXG_01966
Fusarium oxysporum
FOXG_01966
N
0.912
FGSG_06860
Fusarium graminearum
FGSG_06860
N
0.912
FVEG_05126
Fusarium verticillioides
FVEG_05126
N
0.912
fgenesh1_pg.C_scaffold_49000019
Mycosphaerella fijiensis
fgenesh1_pg.C_scaffold_49000019
N
0.904
PMAA_016150
Penicillium marneffei
PMAA_016150
N
0.904
estExt_Genewise1.C_sca_3_chr4_2_00935
Nectria haematococca
estExt_Genewise1.C_sca_3_chr4_2_00935
N
0.880
BC1G_10530
Botrytis cinerea
BC1G_10530
N
0.872
SS1G_04229
Sclerotinia sclerotiorum
SS1G_04229
N
0.872
estExt_Genewise1.C_chr_10003
Mycosphaerella graminicola
estExt_Genewise1.C_chr_10003
N
0.864
AB00394.1
Alternaria brassicicola
AB00394.1
N
0.856
GSTUMT00005341001
Tuber melanosporum
GSTUMT00005341001
N
0.856
estExt_Genewise1.C_270092
Cochliobolus heterostrophus C5
estExt_Genewise1.C_270092
N
0.856
PTRG_10702
Pyrenophora tritici repentis
PTRG_10702
N
0.856
SNOG_09827
Stagonospora nodorum
SNOG_09827
N
0.848
EAT83092.1
Phaeosphaeria nodorum
EAT83092.1
N
0.848
PredSwiss_ASS2010_1021.1
Pneumocystis carinii
PredSwiss_ASS2010_1021.1
N
0.744
PredSwiss_CON3041.3
Pneumocystis carinii
PredSwiss_CON3041.3
N
0.744
SPAP8A3.06
Schizosaccharomyces pombe
SPAP8A3.06
N
0.704
SJAG_00225
Schizosaccharomyces japonicus
SJAG_00225
N
0.704