SS1G_04229 (Sclerotinia sclerotiorum)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		SS1G_04229 T00333_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
SS1T_04229 CCCH ZF 14 39
SS1T_04229 RRM 76 134
SS1T_04229 CCCH ZF 142 168

Links

Other CCCH ZF,RRM family RBPs
Other Sclerotinia sclerotiorum RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BC1G_10530 Botrytis cinerea BC1G_10530 N 1.000
estExt_Genewise1.C_chr_10003 Mycosphaerella graminicola estExt_Genewise1.C_chr_10003 N 0.956
fgenesh1_pg.C_scaffold_49000019 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_49000019 N 0.949
GSTUMT00005341001 Tuber melanosporum GSTUMT00005341001 N 0.929
PMAA_016150 Penicillium marneffei PMAA_016150 N 0.907
TESG_04620 Trichophyton tonsurans TESG_04620 N 0.894
CIMG_04462 Coccidioides immitis CIMG_04462 N 0.894
MCYG_05692 Microsporum canis MCYG_05692 N 0.894
MGYG_02786 Microsporum gypseum MGYG_02786 N 0.894
TERG_06877 Trichophyton rubrum TERG_06877 N 0.894
estExt_Genewise1.C_sca_3_chr4_2_00935 Nectria haematococca estExt_Genewise1.C_sca_3_chr4_2_00935 N 0.889
CPSG_06303 Coccidioides posadasii CPSG_06303 N 0.886
Pa_1_2890 Podospora anserina Pa_1_2890 N 0.885
CHGG_01857 Chaetomium globosum CHGG_01857 N 0.884
estExt_fgenesh3_kg.C_70195 Neurospora discreta estExt_fgenesh3_kg.C_70195 N 0.884
estExt_Genewise1Plus.C_50321 Neurospora tetrasperma estExt_Genewise1Plus.C_50321 N 0.884
NCU03261 Neurospora crassa NCU03261 N 0.884
BDBG_04724 Blastomyces dermatitidis BDBG_04724 N 0.872
VDBG_04657 Verticillium albo atrum VDBG_04657 N 0.868
GLRG_01478 Colletotrichum graminicola GLRG_01478 N 0.868
VDAG_04200 Verticillium dahliae VDAG_04200 N 0.868
AFLA_090330 Aspergillus flavus CADAFLAG00008718 N 0.863
AO090120000034 Aspergillus oryzae CADAORAG00011213 N 0.863
estExt_Genewise1Plus.C_51141 Cryphonectria parasitica estExt_Genewise1Plus.C_51141 N 0.862
FVEG_05126 Fusarium verticillioides FVEG_05126 N 0.860
FOXG_01966 Fusarium oxysporum FOXG_01966 N 0.860
FGSG_06860 Fusarium graminearum FGSG_06860 N 0.860
ACLA_061920 Aspergillus clavatus CADACLAG00005985 N 0.854
An01g01060 Aspergillus niger CADANGAG00000104 N 0.854
ANIA_09362 Aspergillus nidulans CADANIAG00001149 N 0.854
ATEG_07467 Aspergillus terreus CADATEAG00003016 N 0.854
estExt_Genewise1.C_270092 Cochliobolus heterostrophus C5 estExt_Genewise1.C_270092 N 0.849
PTRG_10702 Pyrenophora tritici repentis PTRG_10702 N 0.849
AB00394.1 Alternaria brassicicola AB00394.1 N 0.849
NFIA_003540 Neosartorya fischeri CADNFIAG00000551 N 0.847
fgenesh1_pg.00771_#_421 Aspergillus carbonarius fgenesh1_pg.00771_#_421 N 0.847
AFUA_3G02380 Aspergillus fumigatus CADAFUAG00000282 N 0.847
MGG_09948 Magnaporthe oryzae MGG_09948 N 0.846
EAT83092.1 Phaeosphaeria nodorum EAT83092.1 N 0.840
SNOG_09827 Stagonospora nodorum SNOG_09827 N 0.840
PredSwiss_ASS2010_1021.1 Pneumocystis carinii PredSwiss_ASS2010_1021.1 N 0.746
PredSwiss_CON3041.3 Pneumocystis carinii PredSwiss_CON3041.3 N 0.746