CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1Plus.C_chr_60126
(
Mycosphaerella graminicola
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
estExt_Genewise1Plus.C_chr_60126
T05150_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_chr_60126
CCCH ZF
48
72
QHVPCKFFLQGQCQAGSMCPFSHDV
estExt_Genewise1Plus.C_chr_60126
CCCH ZF
77
99
RPTPCKYFAKGGCKFGRKCALLH
Links
Other
CCCH ZF
family RBPs
Other
Mycosphaerella graminicola
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pg.C_120231
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_120231
N
0.918
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.750
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.750
estExt_Genewise1.C_110035
Neurospora tetrasperma
estExt_Genewise1.C_110035
N
0.720
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
0.720
e_gw1.10.437.1
Cryphonectria parasitica
e_gw1.10.437.1
N
0.720
NCU05007
Neurospora crassa
NCU05007
N
0.720
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.708
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.708
orf19.7385
Candida albicans
orf19.7385
N
0.708
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.708
estExt_Genewise1.C_81229
Thielavia terrestris
estExt_Genewise1.C_81229
N
0.700
CHGG_00049
Chaetomium globosum
CHGG_00049
N
0.700
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.700
ADR062W
Ashbya gossypii
ADR062W
N
0.700
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.700