CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_110035
(
Neurospora tetrasperma
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
estExt_Genewise1.C_110035
T05099_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_110035
CCCH ZF
63
87
SHVPCKFFRQGACQAGSACPFSHDL
estExt_Genewise1.C_110035
CCCH ZF
92
115
ETVCKYFAKGNCKFGPKCANIHVL
Links
Other
CCCH ZF
family RBPs
Other
Neurospora tetrasperma
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
1.000
NCU05007
Neurospora crassa
NCU05007
N
1.000
CHGG_00049
Chaetomium globosum
CHGG_00049
N
0.980
e_gw1.10.437.1
Cryphonectria parasitica
e_gw1.10.437.1
N
0.959
Pa_5_7490
Podospora anserina
Pa_5_7490
N
0.959
gw1.28.197.1
Nectria haematococca
gw1.28.197.1
N
0.959
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.940
estExt_fgenesh1_kg.C_60003
Myceliophthora thermophila
estExt_fgenesh1_kg.C_60003
N
0.940
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.940
GLRG_01727
Colletotrichum graminicola
GLRG_01727
N
0.939
MGG_03480
Magnaporthe oryzae
MGG_03480
N
0.939
estExt_Genewise1.C_81229
Thielavia terrestris
estExt_Genewise1.C_81229
N
0.920
estExt_Genewise1.C_60695
Trichoderma atroviride
estExt_Genewise1.C_60695
N
0.920
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.920
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.920
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.918
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.918
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.765
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.765
ADR062W
Ashbya gossypii
ADR062W
N
0.765
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.740
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.740
estExt_Genewise1Plus.C_chr_60126
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_60126
N
0.720
SJAG_01535
Schizosaccharomyces japonicus
SJAG_01535
N
0.720
XP_002493509.1
Pichia pastoris
XP_002493509.1
N
0.720
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.714
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.714
orf19.7385
Candida albicans
orf19.7385
N
0.714
ACLA_033580
Aspergillus clavatus
CADACLAG00003610
N
0.712
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.706
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.700
estExt_fgenesh1_pg.C_120231
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_120231
N
0.700