CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
CHGG_00049
(
Chaetomium globosum
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
CHGG_00049
T01282_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CHGT_00049
CCCH ZF
48
72
SHVPCKFFRQGACQAGNACPFSHDL
CHGT_00049
CCCH ZF
77
100
ETVCKYFAKGNCKFGPKCANIHVL
Links
Other
CCCH ZF
family RBPs
Other
Chaetomium globosum
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Pa_5_7490
Podospora anserina
Pa_5_7490
N
0.980
NCU05007
Neurospora crassa
NCU05007
N
0.980
estExt_Genewise1.C_110035
Neurospora tetrasperma
estExt_Genewise1.C_110035
N
0.980
gw1.28.197.1
Nectria haematococca
gw1.28.197.1
N
0.980
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
0.980
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.960
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.960
estExt_fgenesh1_kg.C_60003
Myceliophthora thermophila
estExt_fgenesh1_kg.C_60003
N
0.960
MGG_03480
Magnaporthe oryzae
MGG_03480
N
0.959
GLRG_01727
Colletotrichum graminicola
GLRG_01727
N
0.959
estExt_Genewise1.C_81229
Thielavia terrestris
estExt_Genewise1.C_81229
N
0.940
estExt_Genewise1.C_60695
Trichoderma atroviride
estExt_Genewise1.C_60695
N
0.940
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.939
e_gw1.10.437.1
Cryphonectria parasitica
e_gw1.10.437.1
N
0.939
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.939
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.900
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.900
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.784
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.765
ADR062W
Ashbya gossypii
ADR062W
N
0.745
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.735
orf19.7385
Candida albicans
orf19.7385
N
0.735
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.725
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.720
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.720
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.720
SJAG_01535
Schizosaccharomyces japonicus
SJAG_01535
N
0.720
ACLA_033580
Aspergillus clavatus
CADACLAG00003610
N
0.712
XP_002493509.1
Pichia pastoris
XP_002493509.1
N
0.700
estExt_fgenesh1_pg.C_120231
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_120231
N
0.700
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.700
estExt_Genewise1Plus.C_chr_60126
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_60126
N
0.700