e_gw1.29.29.1 (Trichoderma virens)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 e_gw1.29.29.1 T04903_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.29.29.1 CCCH ZF 34 58
e_gw1.29.29.1 CCCH ZF 62 86

Links

Other CCCH ZF family RBPs
Other Trichoderma virens RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh5_pg.C_100355 Trichoderma reesei estExt_fgenesh5_pg.C_100355 N 1.000
estExt_Genewise1.C_60695 Trichoderma atroviride estExt_Genewise1.C_60695 N 0.980
estExt_Genewise1.C_81229 Thielavia terrestris estExt_Genewise1.C_81229 N 0.980
CHGG_00049 Chaetomium globosum CHGG_00049 N 0.960
GLRG_01727 Colletotrichum graminicola GLRG_01727 N 0.960
estExt_fgenesh1_kg.C_60003 Myceliophthora thermophila estExt_fgenesh1_kg.C_60003 N 0.960
NCU05007 Neurospora crassa NCU05007 N 0.940
gw1.28.197.1 Nectria haematococca gw1.28.197.1 N 0.940
Pa_5_7490 Podospora anserina Pa_5_7490 N 0.940
estExt_Genewise1Plus.C_130028 Neurospora discreta estExt_Genewise1Plus.C_130028 N 0.940
estExt_Genewise1.C_110035 Neurospora tetrasperma estExt_Genewise1.C_110035 N 0.940
MGG_03480 Magnaporthe oryzae MGG_03480 N 0.920
VDAG_09556 Verticillium dahliae VDAG_09556 N 0.920
VDBG_09822 Verticillium albo atrum VDBG_09822 N 0.920
FVEG_07196 Fusarium verticillioides FVEG_07196 N 0.900
FOXG_04082 Fusarium oxysporum FOXG_04082 N 0.900
e_gw1.10.437.1 Cryphonectria parasitica e_gw1.10.437.1 N 0.900
SAKL0H10846g Lachancea kluyveri SAKL0H10846g N 0.784
KLLA0B09878g Kluyveromyces lactis KLLA0B09878g N 0.765
Scas_Contig567.6 Saccharomyces castellii Scas_Contig567.6 N 0.745
ADR062W Ashbya gossypii ADR062W N 0.745
SJAG_03191 Schizosaccharomyces japonicus SJAG_03191 N 0.720
orf19.7385 Candida albicans orf19.7385 N 0.720
Cd36_85970 Candida dubliniensis Cd36_85970 N 0.720
ACLA_033580 Aspergillus clavatus CADACLAG00003610 N 0.712
LEE1 Saccharomyces cerevisiae YPL054W N 0.706
23616_YPL054W Saccharomyces paradoxus 23616_YPL054W N 0.706
SPCC1739.01 Schizosaccharomyces pombe SPCC1739.01 N 0.700
e_gwh1.2.1.2495.1 Pichia stipitis e_gwh1.2.1.2495.1 N 0.700
estExt_fgenesh1_pg.C_120231 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_120231 N 0.700
SJAG_01535 Schizosaccharomyces japonicus SJAG_01535 N 0.700
XP_002493509.1 Pichia pastoris XP_002493509.1 N 0.700
estExt_Genewise1Plus.C_chr_60126 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_60126 N 0.700