CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.10.437.1
(
Cryphonectria parasitica
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
e_gw1.10.437.1
T06034_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.10.437.1
CCCH ZF
35
59
AHVPCKFFRQGACQAGSACPFSHDI
e_gw1.10.437.1
CCCH ZF
64
87
ETVCKYFAKGNCKFGPKCANIHVL
Links
Other
CCCH ZF
family RBPs
Other
Cryphonectria parasitica
RBPs
26 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
0.959
estExt_Genewise1.C_110035
Neurospora tetrasperma
estExt_Genewise1.C_110035
N
0.959
NCU05007
Neurospora crassa
NCU05007
N
0.959
MGG_03480
Magnaporthe oryzae
MGG_03480
N
0.939
CHGG_00049
Chaetomium globosum
CHGG_00049
N
0.939
estExt_Genewise1.C_81229
Thielavia terrestris
estExt_Genewise1.C_81229
N
0.920
Pa_5_7490
Podospora anserina
Pa_5_7490
N
0.918
gw1.28.197.1
Nectria haematococca
gw1.28.197.1
N
0.918
estExt_fgenesh1_kg.C_60003
Myceliophthora thermophila
estExt_fgenesh1_kg.C_60003
N
0.900
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.900
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.900
GLRG_01727
Colletotrichum graminicola
GLRG_01727
N
0.898
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.880
estExt_Genewise1.C_60695
Trichoderma atroviride
estExt_Genewise1.C_60695
N
0.880
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.880
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.878
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.878
ADR062W
Ashbya gossypii
ADR062W
N
0.725
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.725
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.725
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.720
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.720
estExt_Genewise1Plus.C_chr_60126
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_60126
N
0.720
estExt_fgenesh1_pg.C_120231
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_120231
N
0.720
ACLA_033580
Aspergillus clavatus
CADACLAG00003610
N
0.712
SJAG_01535
Schizosaccharomyces japonicus
SJAG_01535
N
0.700