MDP0000808281 (Malus x domestica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 MDP0000808281 T06401_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000808281 CCCH ZF 45 71
MDP0000808281 CCCH ZF 90 111
MDP0000808281 CCCH ZF 120 137
MDP0000808281 CCCH ZF 268 294
MDP0000808281 CCCH ZF 314 340

Links

Other CCCH ZF family RBPs
Other Malus x domestica RBPs

10 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000207283 Malus x domestica MDP0000207283 N 0.859
ppa005229m Prunus persica ppa005229m N 0.844
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.793
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.785
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.770
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.770
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.769
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.769
29647.m002009 Ricinus communis 29647.m002009 N 0.763
Glyma10g02540.1 Glycine max Glyma10g02540.1 N 0.748