AAH82645 (Xenopus laevis)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		AAH82645 T07736_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM4
M109_0.6 		Homo sapiens GCGCGSG RNAcompete
Ray et al.(2013)
RNCMPT00113 		0.736
RBM4
M050_0.6 		Homo sapiens GCGCGSS RNAcompete
Ray et al.(2013)
RNCMPT00052 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH82645 RRM 4 66
AAH82645 RRM 80 142
AAH82645 CCHC ZF 160 177

Links

Other CCHC ZF,RRM family RBPs
Other Xenopus laevis RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
rbm4b Xenopus tropicalis ENSXETG00000026649 I 0.944
AAH73203 Xenopus laevis AAH73203 I 0.938
RBM4B Otolemur garnettii ENSOGAG00000015648 I 0.736
RBM4_RABIT Oryctolagus cuniculus ENSOCUG00000006695 I 0.736
ENSOPRG00000009149 Ochotona princeps ENSOPRG00000009149 I 0.736
ENSOCUG00000004731 Oryctolagus cuniculus ENSOCUG00000004731 I 0.736
ENSPPYG00000003010 Pongo pygmaeus ENSPPYG00000003010 I 0.736
RBM4B Procavia capensis ENSPCAG00000003414 I 0.736
RBM4B Ochotona princeps ENSOPRG00000009158 I 0.736
ENSOANG00000003143 Ornithorhynchus anatinus ENSOANG00000003143 I 0.736
A6MLC8_CALJA Callithrix jacchus ENSCJAG00000001294 I 0.736
XM_001364763.1 Monodelphis domestica ENSMODG00000008047 I 0.736
Rbm4b Mus musculus ENSMUSG00000033760 I 0.736
ENSMUSG00000056951 Mus musculus ENSMUSG00000056951 I 0.736
XR_022144.1 Pan troglodytes ENSPTRG00000003934 I 0.736
ENSOANG00000011036 Ornithorhynchus anatinus ENSOANG00000011036 I 0.736
ENSPVAG00000010486 Pteropus vampyrus ENSPVAG00000010486 I 0.736
RBM4B Tursiops truncatus ENSTTRG00000011166 I 0.736
ENSTTRG00000011164 Tursiops truncatus ENSTTRG00000011164 I 0.736
ENSVPAG00000001949 Vicugna pacos ENSVPAG00000001949 I 0.736
Ame_R016449 Ailuropoda melanoleuca Ame_R016449 I 0.736
Ame_R016450 Ailuropoda melanoleuca Ame_R016450 I 0.736
RBM4B Tupaia belangeri ENSTBEG00000003748 I 0.736
RBM4B Spermophilus tridecemlineatus ENSSTOG00000011226 I 0.736
RBM4B Pteropus vampyrus ENSPVAG00000010487 I 0.736
RBM4 Macaca mulatta ENSMMUG00000020363 I 0.736
Rbm4b Rattus norvegicus ENSRNOG00000019650 I 0.736
RBM4B Sorex araneus ENSSARG00000010710 I 0.736
ENSSSCG00000012938 Sus scrofa ENSSSCG00000012938 I 0.736
RBM4B Pan troglodytes ENSPTRG00000003935 I 0.736
ENSMODG00000008056 Monodelphis domestica ENSMODG00000008056 I 0.736
LOC100058729 Equus caballus ENSECAG00000022987 I 0.736
LOC100058690 Equus caballus ENSECAG00000022940 I 0.736
LOC713553 Macaca mulatta ENSMMUG00000010577 I 0.736
ENSFCAG00000007393 Felis catus ENSFCAG00000007393 I 0.736
RBM4B Felis catus ENSFCAG00000007394 I 0.736
RBM4_BOVIN Bos taurus ENSBTAG00000031688 I 0.736
RBM4B Dasypus novemcinctus ENSDNOG00000019500 I 0.736
RBM4B Choloepus hoffmanni ENSCHOG00000002892 I 0.736
RBM4B Canis familiaris ENSCAFG00000012378 I 0.736
ENSCPOG00000013194 Cavia porcellus ENSCPOG00000013194 I 0.736
RBM4B Cavia porcellus ENSCPOG00000013689 I 0.736
ENSCAFG00000012388 Canis familiaris ENSCAFG00000012388 I 0.736
Q2KIV3_BOVIN Bos taurus ENSBTAG00000000423 I 0.736
ENSLAFG00000028147 Loxodonta africana ENSLAFG00000028147 I 0.736
RBM4B Loxodonta africana ENSLAFG00000002285 I 0.736
RBM4 Homo sapiens ENSG00000239306 D 0.736
ENSMICG00000003817 Microcebus murinus ENSMICG00000003817 I 0.736
RBM4B Microcebus murinus ENSMICG00000003820 I 0.736
ENSGGOG00000014455 Gorilla gorilla ENSGGOG00000014455 I 0.736
RBM4B Gorilla gorilla ENSGGOG00000011698 I 0.736
RBM4 Homo sapiens ENSG00000173933 I 0.736
RBM4B Homo sapiens ENSG00000173914 I 0.736
RBM4B Anolis carolinensis ENSACAG00000007777 I 0.736
Rbm4 Rattus norvegicus ENSRNOG00000019669 I 0.736
RBM4B Vicugna pacos ENSVPAG00000001950 I 0.729
RBM4B Erinaceus europaeus ENSEEUG00000000058 I 0.729
ENSOGAG00000015647 Otolemur garnettii ENSOGAG00000015647 I 0.729
ENSDORG00000004538 Dipodomys ordii ENSDORG00000004538 I 0.729
ENSMEUG00000001445 Macropus eugenii ENSMEUG00000001445 I 0.729
LOC425562 Gallus gallus ENSGALG00000018992 I 0.722
ENSPPYG00000003012 Pongo pygmaeus ENSPPYG00000003012 I 0.722
ENSPCAG00000003393 Procavia capensis ENSPCAG00000003393 I 0.722
RBM4B Taeniopygia guttata ENSTGUG00000016779 I 0.722
LOC100394287 Callithrix jacchus ENSCJAG00000001263 I 0.708