CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMEUG00000000773
(
Macropus eugenii
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
ENSMEUG00000000773
T07265_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SRSF7
M353_0.6
Homo sapiens
ACGAGAGAY
SELEX
Cook et al.(2011)
954_10094314
0.976
SRSF7
M331_0.6
Homo sapiens
AGACKACGAY
SELEX
Cook et al.(2011)
790_10094314
0.976
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMEUP00000000707
RRM
3
68
VYVGNLETGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVQGLDGKVICGSRVR
ENSMEUP00000000707
CCHC ZF
94
110
DRCYECGEKGHYAYDCH
Links
Other
CCHC ZF,RRM
family RBPs
Other
Macropus eugenii
RBPs
63 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSMODG00000023693
Monodelphis domestica
ENSMODG00000023693
I
1.000
SRSF7
Tarsius syrichta
ENSTSYG00000012273
I
0.976
SRSF7
Cavia porcellus
ENSCPOG00000011785
I
0.976
SRSF7
Dasypus novemcinctus
ENSDNOG00000007821
I
0.976
Srsf7
Dipodomys ordii
ENSDORG00000008616
I
0.976
SRSF7
Sus scrofa
ENSSSCG00000008484
I
0.976
SRSF7
Tupaia belangeri
ENSTBEG00000004604
I
0.976
SRSF7
Vicugna pacos
ENSVPAG00000003316
I
0.976
SRSF7
Loxodonta africana
ENSLAFG00000005666
I
0.976
SFRS7_BOVIN
Bos taurus
ENSBTAG00000014891
I
0.976
SRSF7
Anolis carolinensis
ENSACAG00000006082
I
0.976
SRSF7
Gorilla gorilla
ENSGGOG00000014620
I
0.976
ENSMEUG00000016459
Macropus eugenii
ENSMEUG00000016459
I
0.976
Sfrs7
Rattus norvegicus
ENSRNOG00000027360
I
0.976
ENSCAFG00000006272
Canis familiaris
ENSCAFG00000006272
I
0.976
LOC100385878
Callithrix jacchus
ENSCJAG00000015185
I
0.976
LOC100054033
Equus caballus
ENSECAG00000008664
I
0.976
SRSF7
Ornithorhynchus anatinus
ENSOANG00000004405
I
0.976
SRSF7
Oryctolagus cuniculus
ENSOCUG00000004087
I
0.976
SRSF7
Otolemur garnettii
ENSOGAG00000010169
I
0.976
Srsf7
Mus musculus
ENSMUSG00000024097
I
0.976
ENSMODG00000008669
Monodelphis domestica
ENSMODG00000008669
I
0.976
SRSF7
Meleagris gallopavo
ENSMGAG00000007415
I
0.976
SRSF7
Myotis lucifugus
ENSMLUG00000015692
I
0.976
SRSF7
Macaca mulatta
ENSMMUG00000011025
I
0.976
SRSF7
Erinaceus europaeus
ENSEEUG00000014487
I
0.976
SRSF7
Ochotona princeps
ENSOPRG00000010234
I
0.976
SRSF7
Homo sapiens
ENSG00000115875
D
0.976
SRSF7
Pteropus vampyrus
ENSPVAG00000012076
I
0.976
ENSPPYG00000012480
Pongo pygmaeus
ENSPPYG00000012480
I
0.976
SRSF7
Procavia capensis
ENSPCAG00000011348
I
0.976
SRSF7
Pan troglodytes
ENSPTRG00000011851
I
0.976
Ame_R012465
Ailuropoda melanoleuca
Ame_R012465
I
0.964
Q5ZMI0_CHICK
Gallus gallus
ENSGALG00000013819
I
0.964
SFRS7
Taeniopygia guttata
ENSTGUG00000002080
I
0.964
B5FZ53_TAEGU
Taeniopygia guttata
ENSTGUG00000002095
I
0.964
AAH77393
Xenopus laevis
AAH77393
I
0.940
srsf7
Xenopus tropicalis
ENSXETG00000025300
I
0.940
AAH77185
Xenopus laevis
AAH77185
I
0.940
ENSRNOG00000025091
Rattus norvegicus
ENSRNOG00000025091
I
0.928
ENSDARG00000054296
Danio rerio
ENSDARG00000054296
I
0.917
SRSF7
Tursiops truncatus
ENSTTRG00000014324
I
0.904
ENSRNOG00000033319
Rattus norvegicus
ENSRNOG00000033319
I
0.892
ENSCHOG00000002390
Choloepus hoffmanni
ENSCHOG00000002390
I
0.880
ENSGALG00000013825
Gallus gallus
ENSGALG00000013825
I
0.867
SRSF7
Gasterosteus aculeatus
ENSGACG00000012311
I
0.833
SRSF7
Takifugu rubripes
ENSTRUG00000010529
I
0.833
SRSF7
Tetraodon nigroviridis
ENSTNIG00000014279
I
0.833
SRSF7
Oryzias latipes
ENSORLG00000000746
I
0.810
SRSF7
Danio rerio
ENSDARG00000035325
I
0.810
PHUM241330
Pediculus humanus
PHUM241330
I
0.771
BGIBMGA010396
Bombyx mori
BGIBMGA010396
I
0.771
amel4_ncbi_hmm42637
Apis mellifera
amel4_ncbi_hmm42637
I
0.750
CpipJ_CPIJ013237
Culex pipiens
CpipJ_CPIJ013237
I
0.747
estExt_Genewise1.C_1590063
Capitella teleta
estExt_Genewise1.C_1590063
I
0.747
CPIJ013237
Culex quinquefasciatus
CPIJ013237
I
0.747
AAEL017082
Aedes aegypti
AAEL017082
I
0.726
DGIL_AUG5s7527g2t1
Acyrtosiphon pisum
DGIL_AUG5s7527g2t1
I
0.726
PHUM284060
Pediculus humanus
PHUM284060
I
0.714
ISCW006562
Ixodes scapularis
ISCW006562
I
0.714
AGAP008303
Anopheles gambiae
AGAP008303
I
0.711
fgenesh2_pg.scaffold_208000073
Branchiostoma floridae
fgenesh2_pg.scaffold_208000073
I
0.702
e_gw.267.117.1
Branchiostoma floridae
e_gw.267.117.1
I
0.702