PHUM284060 (Pediculus humanus)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		PHUM284060 T07407_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF7
M353_0.6 		Homo sapiens ACGAGAGAY SELEX
Cook et al.(2011)
954_10094314 		0.738
SRSF7
M331_0.6 		Homo sapiens AGACKACGAY SELEX
Cook et al.(2011)
790_10094314 		0.738
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PHUM284060-PA RRM 13 78
PHUM284060-PA CCHC ZF 106 123

Links

Other CCHC ZF,RRM family RBPs
Other Pediculus humanus RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PHUM241330 Pediculus humanus PHUM241330 I 0.893
DGIL_AUG5s7527g2t1 Acyrtosiphon pisum DGIL_AUG5s7527g2t1 I 0.857
BGIBMGA010396 Bombyx mori BGIBMGA010396 I 0.821
amel4_ncbi_hmm42637 Apis mellifera amel4_ncbi_hmm42637 I 0.810
AGAP008303 Anopheles gambiae AGAP008303 I 0.798
CPIJ013237 Culex quinquefasciatus CPIJ013237 I 0.786
CpipJ_CPIJ013237 Culex pipiens CpipJ_CPIJ013237 I 0.786
AAEL017082 Aedes aegypti AAEL017082 I 0.786
ISCW006562 Ixodes scapularis ISCW006562 I 0.774
ENSMODG00000008669 Monodelphis domestica ENSMODG00000008669 I 0.750
SRSF7 Macaca mulatta ENSMMUG00000011025 I 0.750
SRSF7 Gasterosteus aculeatus ENSGACG00000012311 I 0.750
SRSF7 Ornithorhynchus anatinus ENSOANG00000004405 I 0.750
SRSF7 Tetraodon nigroviridis ENSTNIG00000014279 I 0.750
SRSF7 Takifugu rubripes ENSTRUG00000010529 I 0.750
SRSF7 Pan troglodytes ENSPTRG00000011851 I 0.750
SRSF7 Homo sapiens ENSG00000115875 D 0.750
SRSF7 Loxodonta africana ENSLAFG00000005666 I 0.750
LOC100385878 Callithrix jacchus ENSCJAG00000015185 I 0.750
Ame_R012465 Ailuropoda melanoleuca Ame_R012465 I 0.750
ENSPPYG00000012480 Pongo pygmaeus ENSPPYG00000012480 I 0.738
AAH77393 Xenopus laevis AAH77393 I 0.738
SRSF7 Pteropus vampyrus ENSPVAG00000012076 I 0.738
SRSF7 Procavia capensis ENSPCAG00000011348 I 0.738
SRSF7 Otolemur garnettii ENSOGAG00000010169 I 0.738
SRSF7 Ochotona princeps ENSOPRG00000010234 I 0.738
SRSF7 Oryzias latipes ENSORLG00000000746 I 0.738
Sfrs7 Rattus norvegicus ENSRNOG00000027360 I 0.738
SRSF7 Tupaia belangeri ENSTBEG00000004604 I 0.738
srsf7 Xenopus tropicalis ENSXETG00000025300 I 0.738
estExt_Genewise1.C_1590063 Capitella teleta estExt_Genewise1.C_1590063 I 0.738
SRSF7 Vicugna pacos ENSVPAG00000003316 I 0.738
SRSF7 Tarsius syrichta ENSTSYG00000012273 I 0.738
SRSF7 Oryctolagus cuniculus ENSOCUG00000004087 I 0.738
AAH77185 Xenopus laevis AAH77185 I 0.738
SRSF7 Sus scrofa ENSSSCG00000008484 I 0.738
SRSF7 Anolis carolinensis ENSACAG00000006082 I 0.738
SRSF7 Erinaceus europaeus ENSEEUG00000014487 I 0.738
SRSF7 Cavia porcellus ENSCPOG00000011785 I 0.738
LOC100054033 Equus caballus ENSECAG00000008664 I 0.738
Srsf7 Dipodomys ordii ENSDORG00000008616 I 0.738
ENSDARG00000054296 Danio rerio ENSDARG00000054296 I 0.738
SRSF7 Dasypus novemcinctus ENSDNOG00000007821 I 0.738
ENSMEUG00000016459 Macropus eugenii ENSMEUG00000016459 I 0.738
SRSF7 Gorilla gorilla ENSGGOG00000014620 I 0.738
ENSCAFG00000006272 Canis familiaris ENSCAFG00000006272 I 0.738
SFRS7_BOVIN Bos taurus ENSBTAG00000014891 I 0.738
Srsf7 Mus musculus ENSMUSG00000024097 I 0.738
SRSF7 Myotis lucifugus ENSMLUG00000015692 I 0.738
SRSF7 Meleagris gallopavo ENSMGAG00000007415 I 0.738
fgenesh2_pg.scaffold_208000073 Branchiostoma floridae fgenesh2_pg.scaffold_208000073 I 0.726
e_gw.267.117.1 Branchiostoma floridae e_gw.267.117.1 I 0.726
SRSF7 Danio rerio ENSDARG00000035325 I 0.726
Q5ZMI0_CHICK Gallus gallus ENSGALG00000013819 I 0.726
SFRS7 Taeniopygia guttata ENSTGUG00000002080 I 0.726
B5FZ53_TAEGU Taeniopygia guttata ENSTGUG00000002095 I 0.726
ENSMEUG00000000773 Macropus eugenii ENSMEUG00000000773 I 0.714
ENSMODG00000023693 Monodelphis domestica ENSMODG00000023693 I 0.714