fmr1 (Xenopus tropicalis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSXETG00000019647 T19772_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FXR1
M152_0.6 		Homo sapiens AYGACR RNAcompete
Ray et al.(2013)
RNCMPT00161 		0.777
FXR2
M020_0.6 		Homo sapiens DGACRRR RNAcompete
Ray et al.(2013)
RNCMPT00020 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000042153 KH 220 279
ENSXETP00000042153 KH 283 351
ENSXETP00000042520 KH 220 279
ENSXETP00000042520 KH 283 351

Links

Other KH family RBPs
Other Xenopus tropicalis RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q2KHP9 Xenopus laevis Q2KHP9 I 0.984
AAI70204 Xenopus laevis AAI70204 I 0.984
AAI12953 Xenopus laevis AAI12953 I 0.984
AAC59683 Xenopus laevis AAC59683 I 0.977
P51113 Xenopus laevis P51113 I 0.977
Q5ZHM3_CHICK Gallus gallus ENSGALG00000009177 I 0.946
FMR1 Canis familiaris ENSCAFG00000019085 I 0.930
fmr1 Danio rerio ENSDARG00000037433 I 0.832
FMR1 Oryzias latipes ENSORLG00000009094 I 0.824
FMR1 Gasterosteus aculeatus ENSGACG00000018742 I 0.813
Fxr1 Mus musculus ENSMUSG00000027680 I 0.785
FXR1 Ornithorhynchus anatinus ENSOANG00000011045 I 0.785
FXR1 Monodelphis domestica ENSMODG00000021294 I 0.785
FXR2 Oryzias latipes ENSORLG00000011571 I 0.783
FMR1 Tetraodon nigroviridis ENSTNIG00000010121 N 0.780
AAY79166 Xenopus laevis AAY79166 I 0.777
FXR1 Loxodonta africana ENSLAFG00000001908 I 0.777
FXR1 Gorilla gorilla ENSGGOG00000009957 I 0.777
Ame_R018977 Ailuropoda melanoleuca Ame_R018977 I 0.777
FXR1 Echinops telfairi ENSETEG00000006891 I 0.777
FXR1 Equus caballus ENSECAG00000007560 I 0.777
Q5F3S6_CHICK Gallus gallus ENSGALG00000008864 I 0.777
FXR1 Myotis lucifugus ENSMLUG00000006840 I 0.777
FXR1 Oryctolagus cuniculus ENSOCUG00000023518 I 0.777
FXR1 Pteropus vampyrus ENSPVAG00000002823 I 0.777
ENSPPYG00000014327 Pongo pygmaeus ENSPPYG00000014327 I 0.777
FXR1 Cavia porcellus ENSCPOG00000010418 I 0.777
FXR1 Pan troglodytes ENSPTRG00000015656 I 0.777
FXR1 Macaca mulatta ENSMMUG00000012105 I 0.777
FXR1 Meleagris gallopavo ENSMGAG00000009602 I 0.777
FXR1 Homo sapiens ENSG00000114416 D 0.777
FXR1 Callithrix jacchus ENSCJAG00000012802 I 0.777
FXR1 Tarsius syrichta ENSTSYG00000001610 I 0.777
FXR1_BOVIN Bos taurus ENSBTAG00000016457 I 0.777
FXR1 Canis familiaris ENSCAFG00000011582 I 0.777
AAH73457 Xenopus laevis AAH73457 I 0.777
FXR1 Tursiops truncatus ENSTTRG00000014698 I 0.777
FXR1 Anolis carolinensis ENSACAG00000003918 I 0.777
P51115 Xenopus laevis P51115 I 0.777
AAI31885 Xenopus laevis AAI31885 I 0.777
fxr1 Xenopus tropicalis ENSXETG00000019441 I 0.777
FXR1 Vicugna pacos ENSVPAG00000003384 I 0.777
AAY79165 Xenopus laevis AAY79165 I 0.777
AAC59682 Xenopus laevis AAC59682 I 0.769
Q7ZTQ5 Xenopus laevis Q7ZTQ5 I 0.769
FXR1 Taeniopygia guttata ENSTGUG00000010560 I 0.769
FXR1 Sus scrofa ENSSSCG00000011769 I 0.769
AAH43638 Xenopus laevis AAH43638 I 0.769
FXR1 Erinaceus europaeus ENSEEUG00000006823 I 0.769
Ame_R012967 Ailuropoda melanoleuca Ame_R012967 I 0.762
FXR1 Gasterosteus aculeatus ENSGACG00000006052 I 0.762
FXR2 Canis familiaris ENSCAFG00000016685 I 0.762
Fmr1 Dipodomys ordii ENSDORG00000012501 N 0.759
FMR1 Takifugu rubripes ENSTRUG00000005362 N 0.758
FMR1 Sorex araneus ENSSARG00000003475 N 0.756
FXR2 Vicugna pacos ENSVPAG00000000147 I 0.754
FXR2 Cavia porcellus ENSCPOG00000023303 I 0.754
ENSPPYG00000007930 Pongo pygmaeus ENSPPYG00000007930 I 0.754
FXR2 Anolis carolinensis ENSACAG00000000561 I 0.754
FXR2 Oryctolagus cuniculus ENSOCUG00000010393 I 0.754
FXR2 Pan troglodytes ENSPTRG00000008698 I 0.754
FXR2 Spermophilus tridecemlineatus ENSSTOG00000005657 I 0.754
Fxr2 Mus musculus ENSMUSG00000018765 I 0.754
LOC100147323 Equus caballus ENSECAG00000007051 I 0.754
FXR2 Pteropus vampyrus ENSPVAG00000016306 I 0.754
fxr1 Danio rerio ENSDARG00000022968 I 0.754
FXR2 Monodelphis domestica ENSMODG00000007179 I 0.754
FXR2 Felis catus ENSFCAG00000009620 I 0.754
FXR2 Echinops telfairi ENSETEG00000018613 I 0.754
FXR2 Sus scrofa ENSSSCG00000017953 I 0.754
FXR2 Tupaia belangeri ENSTBEG00000002514 I 0.754
FXR2 Homo sapiens ENSG00000129245 D 0.754
Fxr2 Rattus norvegicus ENSRNOG00000011876 I 0.754
FXR2 Erinaceus europaeus ENSEEUG00000013410 I 0.754
FXR2 Macaca mulatta ENSMMUG00000013510 I 0.754
FXR2 Callithrix jacchus ENSCJAG00000015063 I 0.754
FXR2 Tursiops truncatus ENSTTRG00000010231 I 0.754
FXR2 Bos taurus ENSBTAG00000005462 I 0.754
FXR2 Microcebus murinus ENSMICG00000014799 I 0.754
FMR1 Ornithorhynchus anatinus ENSOANG00000001097 I 0.750
FMR1 Gorilla gorilla ENSGGOG00000010373 N 0.746
FXR2 Procavia capensis ENSPCAG00000013184 I 0.746
FXR2 Loxodonta africana ENSLAFG00000001114 I 0.746
FXR2 Ochotona princeps ENSOPRG00000017108 I 0.746
FXR1 Ochotona princeps ENSOPRG00000009223 I 0.746
LOC100414871 Callithrix jacchus ENSCJAG00000003925 I 0.741
FMR1 Oryctolagus cuniculus ENSOCUG00000014621 N 0.741
FMR1 Ochotona princeps ENSOPRG00000012759 N 0.739
FXR2 Dasypus novemcinctus ENSDNOG00000001047 I 0.738
FXR1 Oryzias latipes ENSORLG00000011787 I 0.738
FXR2 Takifugu rubripes ENSTRUG00000010696 I 0.736
FXR2 Tetraodon nigroviridis ENSTNIG00000005118 I 0.736
FMR1 Homo sapiens ENSG00000102081 D 0.735
FMR1 Pan troglodytes ENSPTRG00000022349 I 0.735
FMR1 Macaca mulatta ENSMMUG00000015814 I 0.735
FXR1 Takifugu rubripes ENSTRUG00000003486 I 0.731
FXR1 Tetraodon nigroviridis ENSTNIG00000003790 I 0.731
FMR1 Procavia capensis ENSPCAG00000011936 N 0.727
FMR1 Loxodonta africana ENSLAFG00000013592 N 0.725
FMR1 Spermophilus tridecemlineatus ENSSTOG00000003260 N 0.725
FXR2 Myotis lucifugus ENSMLUG00000003438 I 0.723
Fmr1 Mus musculus ENSMUSG00000000838 I 0.723
Q0II33_BOVIN Bos taurus ENSBTAG00000012552 N 0.717
FMR1 Taeniopygia guttata ENSTGUG00000004735 I 0.715
FMR1 Cavia porcellus ENSCPOG00000003723 N 0.714
FMR1 Anolis carolinensis ENSACAG00000007899 N 0.713
FMR1 Meleagris gallopavo ENSMGAG00000008270 N 0.713
amel4_ncbi_hmm37854 Apis mellifera amel4_ncbi_hmm37854 I 0.710
FMR1 Otolemur garnettii ENSOGAG00000013061 N 0.708
nasonia_NCBI_hmm462784 Nasonia vitripennis nasonia_NCBI_hmm462784 I 0.702
AAEL009326 Aedes aegypti AAEL009326 I 0.702
FMR1_RAT Rattus norvegicus ENSRNOG00000011900 I 0.702