CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PCBP3
(
Spermophilus tridecemlineatus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSSTOG00000007178
T19523_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000006415
KH
30
73
KALTVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI
ENSSTOP00000006415
KH
97
160
TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI
Links
Other
KH
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PCBP3
Tarsius syrichta
ENSTSYG00000005254
N
0.972
pcbp1
Xenopus tropicalis
ENSXETG00000011483
N
0.955
ENSPPYG00000011525
Pongo pygmaeus
ENSPPYG00000011525
N
0.914
Pcbp3
Mus musculus
ENSMUSG00000001120
D
0.848
PCBP3
Canis familiaris
ENSCAFG00000011907
N
0.848
AAH74333
Xenopus laevis
AAH74333
N
0.848
PCBP3
Ornithorhynchus anatinus
ENSOANG00000006265
N
0.848
Pcbp3
Rattus norvegicus
ENSRNOG00000001245
I
0.848
Pcbp3
Dipodomys ordii
ENSDORG00000003640
N
0.848
AAI33216
Xenopus laevis
AAI33216
N
0.840
pcbp3
Danio rerio
ENSDARG00000054378
I
0.832
PCBP3
Sorex araneus
ENSSARG00000007629
N
0.826
PCBP3
Takifugu rubripes
ENSTRUG00000013604
I
0.824
ENSMGAG00000003191
Meleagris gallopavo
ENSMGAG00000003191
N
0.770
PCBP2
Erinaceus europaeus
ENSEEUG00000001077
N
0.752
LOC426023
Gallus gallus
ENSGALG00000013313
N
0.752
PCBP2
Vicugna pacos
ENSVPAG00000000406
N
0.752
ENSTNIG00000003546
Tetraodon nigroviridis
ENSTNIG00000003546
N
0.746
zgc:110045
Danio rerio
ENSDARG00000057141
N
0.744
ENSTRUG00000017789
Takifugu rubripes
ENSTRUG00000017789
I
0.744
PCBP4
Danio rerio
ENSDARG00000024276
N
0.704