ENSTRUG00000017789 (Takifugu rubripes)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTRUG00000017789 T19663_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.779
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.747
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.737
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.726
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.726
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000045596 KH 15 75
ENSTRUP00000045596 KH 99 162
ENSTRUP00000045596 KH 286 348
ENSTRUP00000045597 KH 18 78
ENSTRUP00000045597 KH 102 165
ENSTRUP00000045597 KH 247 309
ENSTRUP00000045598 KH 6 66
ENSTRUP00000045598 KH 90 153
ENSTRUP00000045598 KH 256 318
ENSTRUP00000045599 KH 13 76
ENSTRUP00000045599 KH 161 223
ENSTRUP00000045600 KH 15 75
ENSTRUP00000045600 KH 99 162

Links

Other KH family RBPs
Other Takifugu rubripes RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.958
ENSTNIG00000003546 Tetraodon nigroviridis ENSTNIG00000003546 N 0.928
zgc:110045 Danio rerio ENSDARG00000057141 N 0.920
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.900
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.888
AAH74333 Xenopus laevis AAH74333 N 0.888
PCBP3 Canis familiaris ENSCAFG00000011907 N 0.888
Pcbp3 Dipodomys ordii ENSDORG00000003640 N 0.888
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.888
PCBP3 Ornithorhynchus anatinus ENSOANG00000006265 N 0.888
AAI33216 Xenopus laevis AAI33216 N 0.880
pcbp3 Danio rerio ENSDARG00000054378 I 0.880
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.872
PCBP4 Danio rerio ENSDARG00000024276 N 0.840
ENSPPYG00000011525 Pongo pygmaeus ENSPPYG00000011525 N 0.824
LOC426023 Gallus gallus ENSGALG00000013313 N 0.816
PCBP2 Erinaceus europaeus ENSEEUG00000001077 N 0.816
PCBP2 Vicugna pacos ENSVPAG00000000406 N 0.816
pcbp2 Xenopus tropicalis ENSXETG00000010491 N 0.811
PCBP3 Gallus gallus ENSGALG00000013155 I 0.805
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.805
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.803
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.800
PCBP4 Homo sapiens ENSG00000090097 I 0.792
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.784
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.779
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.779
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.779
PCBP3 Homo sapiens ENSG00000183570 I 0.779
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.779
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.779
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.779
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.779
LOC100050101 Equus caballus ENSECAG00000012413 I 0.779
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.779
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.779
PHUM522820 Pediculus humanus PHUM522820 N 0.776
pcbp1 Xenopus tropicalis ENSXETG00000011483 N 0.776
PCBP3 Gallus gallus ENSGALG00000004394 I 0.774
CAD13196 Xenopus laevis CAD13196 N 0.772
PCBP2 Sorex araneus ENSSARG00000000999 N 0.772
PCBP2 Choloepus hoffmanni ENSCHOG00000012759 N 0.772
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.768
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.768
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.768
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.763
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.763
ENSMGAG00000003191 Meleagris gallopavo ENSMGAG00000003191 N 0.760
PCBP3 Tarsius syrichta ENSTSYG00000005254 N 0.760
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.758
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.753
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.753
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.747
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.747
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.747
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.747
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.747
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.747
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.747
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.747
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.747
PCBP2 Equus caballus ENSECAG00000022389 I 0.747
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.747
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.747
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.747
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.747
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.747
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.747
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.747
PCBP2 Homo sapiens ENSG00000197111 D 0.747
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.747
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.747
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.747
PCBP3 Spermophilus tridecemlineatus ENSSTOG00000007178 N 0.744
AAH84195 Xenopus laevis AAH84195 I 0.742
CAB50743 Xenopus laevis CAB50743 I 0.742
CAD29864 Xenopus laevis CAD29864 I 0.742
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.742
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.742
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.742
AAH41241 Xenopus laevis AAH41241 I 0.742
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.741
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.741
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.737
pcbp2 Danio rerio ENSDARG00000013184 D 0.737
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.737
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.731
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.730
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.728
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.726
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.726
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.726
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.726
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.726
LOC100050579 Equus caballus ENSECAG00000002544 I 0.726
PCBP1 Homo sapiens ENSG00000169564 D 0.726
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.726
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.726
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.726
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.726
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.726
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.726
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.725
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.725
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.721
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.721
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.720
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.716
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.714
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.714
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.714
LOC100060660 Equus caballus ENSECAG00000024218 I 0.714
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.714
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.714
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.714
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.714
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.714
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.714
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.714
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.711
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.711
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.709
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.705
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.705
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.705
PCBP4 Taeniopygia guttata ENSTGUG00000006393 I 0.704
PCBP4 Oryzias latipes ENSORLG00000003061 I 0.704