CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC426023
(
Gallus gallus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSGALG00000013313
T18875_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000021708
KH
15
75
TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI
ENSGALP00000021708
KH
99
162
TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQI
Links
Other
KH
family RBPs
Other
Gallus gallus
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PCBP2
Vicugna pacos
ENSVPAG00000000406
N
1.000
PCBP2
Erinaceus europaeus
ENSEEUG00000001077
N
1.000
ENSMGAG00000003191
Meleagris gallopavo
ENSMGAG00000003191
N
0.936
AAH74333
Xenopus laevis
AAH74333
N
0.904
PCBP3
Canis familiaris
ENSCAFG00000011907
N
0.904
Pcbp3
Dipodomys ordii
ENSDORG00000003640
N
0.904
PCBP3
Ornithorhynchus anatinus
ENSOANG00000006265
N
0.904
Pcbp3
Mus musculus
ENSMUSG00000001120
D
0.904
Pcbp3
Rattus norvegicus
ENSRNOG00000001245
I
0.904
pcbp3
Danio rerio
ENSDARG00000054378
I
0.896
AAI33216
Xenopus laevis
AAI33216
N
0.896
PCBP3
Takifugu rubripes
ENSTRUG00000013604
I
0.888
ENSPPYG00000011525
Pongo pygmaeus
ENSPPYG00000011525
N
0.832
zgc:110045
Danio rerio
ENSDARG00000057141
N
0.816
ENSTRUG00000017789
Takifugu rubripes
ENSTRUG00000017789
I
0.816
PCBP4
Danio rerio
ENSDARG00000024276
N
0.784
pcbp1
Xenopus tropicalis
ENSXETG00000011483
N
0.784
PCBP4
Takifugu rubripes
ENSTRUG00000007426
I
0.776
PCBP3
Tarsius syrichta
ENSTSYG00000005254
N
0.768
PCBP4
Homo sapiens
ENSG00000090097
I
0.752
PHUM522820
Pediculus humanus
PHUM522820
N
0.752
PCBP3
Spermophilus tridecemlineatus
ENSSTOG00000007178
N
0.752
ENSTNIG00000003546
Tetraodon nigroviridis
ENSTNIG00000003546
N
0.752
ENSRNOG00000036988
Rattus norvegicus
ENSRNOG00000036988
N
0.750