B9HXY8_POPTR (Populus trichocarpa)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 POPTR_0010s17430 T20214_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s17430.1 KH 43 102
POPTR_0010s17430.1 KH 148 215
POPTR_0010s17430.1 KH 280 335
POPTR_0010s17430.1 KH 365 442
POPTR_0010s17430.2 KH 43 102
POPTR_0010s17430.2 KH 148 215
POPTR_0010s17430.2 KH 280 335
POPTR_0010s17430.2 KH 365 432
POPTR_0010s17430.3 KH 43 102
POPTR_0010s17430.3 KH 148 215
POPTR_0010s17430.3 KH 280 335
POPTR_0010s17430.3 KH 365 432

Links

Other KH family RBPs
Other Populus trichocarpa RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HI86_POPTR Populus trichocarpa POPTR_0008s08810 N 0.952
cassava12023.valid.m1 Manihot esculenta cassava12023.valid.m1 N 0.877
cassava12022.valid.m1 Manihot esculenta cassava12022.valid.m1 N 0.877
29813.m001513 Ricinus communis 29813.m001513 N 0.874
GSVIVG00019958001 Vitis vinifera GSVIVG00019958001 N 0.829
GSVIVG00011439001 Vitis vinifera GSVIVG00011439001 N 0.748
cassava42742.valid.m1 Manihot esculenta cassava42742.valid.m1 N 0.713
cassava42739.valid.m1 Manihot esculenta cassava42739.valid.m1 N 0.713
cassava42741.valid.m1 Manihot esculenta cassava42741.valid.m1 N 0.713
cassava42740.valid.m1 Manihot esculenta cassava42740.valid.m1 N 0.713
Glyma09g37070.1 Glycine max Glyma09g37070.1 N 0.710
mgf007265m Mimulus guttatus mgf007265m N 0.709
Glyma18g49600.1 Glycine max Glyma18g49600.1 N 0.709
Cucsa.158200 Cucumis sativus Cucsa.158200 N 0.709
mgf011898m Mimulus guttatus mgf011898m N 0.709