cassava42742.valid.m1 (Manihot esculenta)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 cassava42742.valid.m1 T20696_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava42742.valid.m1 KH 43 100
cassava42742.valid.m1 KH 140 207
cassava42742.valid.m1 KH 283 336
cassava42742.valid.m1 KH 369 436

Links

Other KH family RBPs
Other Manihot esculenta RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava42740.valid.m1 Manihot esculenta cassava42740.valid.m1 N 1.000
cassava42739.valid.m1 Manihot esculenta cassava42739.valid.m1 N 1.000
cassava42741.valid.m1 Manihot esculenta cassava42741.valid.m1 N 1.000
A9PE42_POPTR Populus trichocarpa POPTR_0017s12170 N 0.869
GSVIVG00011439001 Vitis vinifera GSVIVG00011439001 N 0.865
ppa003758m Prunus persica ppa003758m N 0.856
Cucsa.158200 Cucumis sativus Cucsa.158200 N 0.852
B9H0D1_POPTR Populus trichocarpa POPTR_0004s12220 N 0.845
PK16782.1 Cannabis sativa PK16782.1 N 0.836
MDP0000573228 Malus x domestica MDP0000573228 N 0.827
Glyma18g49600.1 Glycine max Glyma18g49600.1 N 0.825
Glyma09g37070.1 Glycine max Glyma09g37070.1 N 0.821
mgf007265m Mimulus guttatus mgf007265m N 0.821
mgf011898m Mimulus guttatus mgf011898m N 0.821
Glyma19g02840.1 Glycine max Glyma19g02840.1 N 0.815
chr1.CM0141.280.nc Lotus japonicus chr1.CM0141.280.nc N 0.814
Glyma13g05520.1 Glycine max Glyma13g05520.1 N 0.806
LjSGA_002278.2 Lotus japonicus LjSGA_002278.2 N 0.803
Medtr7g010360 Medicago truncatula Medtr7g010360 N 0.796
Medtr6g013130 Medicago truncatula Medtr6g013130 N 0.794
GSVIVG00019958001 Vitis vinifera GSVIVG00019958001 N 0.793
AT5G15270 Arabidopsis thaliana AT5G15270-TAIR-G N 0.782
XM_002871611.1 Arabidopsis lyrata fgenesh2_kg.6__1509__AT5G15270.1 N 0.778
cassava12023.valid.m1 Manihot esculenta cassava12023.valid.m1 N 0.739
cassava12022.valid.m1 Manihot esculenta cassava12022.valid.m1 N 0.739
29813.m001513 Ricinus communis 29813.m001513 N 0.735
B9HI86_POPTR Populus trichocarpa POPTR_0008s08810 N 0.720
B9HXY8_POPTR Populus trichocarpa POPTR_0010s17430 N 0.713
BRADI1G61230 Brachypodium distachyon BRADI1G61230 N 0.705
GRMZM2G084540 Zea mays GRMZM2G084540 N 0.702
GRMZM2G126120 Zea mays GRMZM2G126120 N 0.702