Cucsa.158200 (Cucumis sativus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 Cucsa.158200 T20710_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.158200.1 KH 44 101
Cucsa.158200.1 KH 141 208
Cucsa.158200.1 KH 284 339
Cucsa.158200.1 KH 370 437
Cucsa.158200.2 KH 44 101
Cucsa.158200.2 KH 141 208
Cucsa.158200.2 KH 284 339
Cucsa.158200.2 KH 370 437

Links

Other KH family RBPs
Other Cucumis sativus RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava42739.valid.m1 Manihot esculenta cassava42739.valid.m1 N 0.852
cassava42740.valid.m1 Manihot esculenta cassava42740.valid.m1 N 0.852
cassava42742.valid.m1 Manihot esculenta cassava42742.valid.m1 N 0.852
cassava42741.valid.m1 Manihot esculenta cassava42741.valid.m1 N 0.852
GSVIVG00011439001 Vitis vinifera GSVIVG00011439001 N 0.841
ppa003758m Prunus persica ppa003758m N 0.836
MDP0000573228 Malus x domestica MDP0000573228 N 0.835
Glyma18g49600.1 Glycine max Glyma18g49600.1 N 0.825
Glyma09g37070.1 Glycine max Glyma09g37070.1 N 0.817
PK16782.1 Cannabis sativa PK16782.1 N 0.816
Glyma19g02840.1 Glycine max Glyma19g02840.1 N 0.815
chr1.CM0141.280.nc Lotus japonicus chr1.CM0141.280.nc N 0.810
LjSGA_002278.2 Lotus japonicus LjSGA_002278.2 N 0.807
mgf007265m Mimulus guttatus mgf007265m N 0.805
mgf011898m Mimulus guttatus mgf011898m N 0.805
A9PE42_POPTR Populus trichocarpa POPTR_0017s12170 N 0.797
Medtr7g010360 Medicago truncatula Medtr7g010360 N 0.796
XM_002871611.1 Arabidopsis lyrata fgenesh2_kg.6__1509__AT5G15270.1 N 0.790
B9H0D1_POPTR Populus trichocarpa POPTR_0004s12220 N 0.789
Glyma13g05520.1 Glycine max Glyma13g05520.1 N 0.787
AT5G15270 Arabidopsis thaliana AT5G15270-TAIR-G N 0.786
Medtr6g013130 Medicago truncatula Medtr6g013130 N 0.786
GSVIVG00019958001 Vitis vinifera GSVIVG00019958001 N 0.750
cassava12022.valid.m1 Manihot esculenta cassava12022.valid.m1 N 0.715
cassava12023.valid.m1 Manihot esculenta cassava12023.valid.m1 N 0.715
BRADI1G61230 Brachypodium distachyon BRADI1G61230 N 0.713
B9HXY8_POPTR Populus trichocarpa POPTR_0010s17430 N 0.709
GRMZM2G126120 Zea mays GRMZM2G126120 N 0.706
GRMZM2G084540 Zea mays GRMZM2G084540 N 0.706
29813.m001513 Ricinus communis 29813.m001513 N 0.704
LOC_Os03g25970 Oryza sativa LOC_Os03g25970 N 0.702
Sb01g034070 Sorghum bicolor Sb01g034070 N 0.702
B9HI86_POPTR Populus trichocarpa POPTR_0008s08810 N 0.701