cassava12023.valid.m1 (Manihot esculenta)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 cassava12023.valid.m1 T20639_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava12023.valid.m1 KH 93 151
cassava12023.valid.m1 KH 196 263
cassava12023.valid.m1 KH 330 385
cassava12023.valid.m1 KH 415 480

Links

Other KH family RBPs
Other Manihot esculenta RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava12022.valid.m1 Manihot esculenta cassava12022.valid.m1 N 1.000
29813.m001513 Ricinus communis 29813.m001513 N 0.909
B9HXY8_POPTR Populus trichocarpa POPTR_0010s17430 N 0.877
B9HI86_POPTR Populus trichocarpa POPTR_0008s08810 N 0.877
GSVIVG00019958001 Vitis vinifera GSVIVG00019958001 N 0.861
GSVIVG00011439001 Vitis vinifera GSVIVG00011439001 N 0.763
cassava42740.valid.m1 Manihot esculenta cassava42740.valid.m1 N 0.739
cassava42739.valid.m1 Manihot esculenta cassava42739.valid.m1 N 0.739
cassava42741.valid.m1 Manihot esculenta cassava42741.valid.m1 N 0.739
cassava42742.valid.m1 Manihot esculenta cassava42742.valid.m1 N 0.739
Glyma09g37070.1 Glycine max Glyma09g37070.1 N 0.723
Glyma18g49600.1 Glycine max Glyma18g49600.1 N 0.722
A9PE42_POPTR Populus trichocarpa POPTR_0017s12170 N 0.715
Cucsa.158200 Cucumis sativus Cucsa.158200 N 0.715
PK16782.1 Cannabis sativa PK16782.1 N 0.714
mgf011898m Mimulus guttatus mgf011898m N 0.708
mgf007265m Mimulus guttatus mgf007265m N 0.708
chr1.CM0141.280.nc Lotus japonicus chr1.CM0141.280.nc N 0.706
ppa003758m Prunus persica ppa003758m N 0.704
B9H0D1_POPTR Populus trichocarpa POPTR_0004s12220 N 0.704
MDP0000573228 Malus x domestica MDP0000573228 N 0.703