Glyma09g06460.1 (Glycine max)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Glyma09g06460.1 T24882_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma09g06460.1 PUF 568 602
Glyma09g06460.1 PUF 604 638
Glyma09g06460.1 PUF 640 674
Glyma09g06460.1 PUF 676 710
Glyma09g06460.1 PUF 712 747
Glyma09g06460.1 PUF 749 783
Glyma09g06460.1 PUF 785 819
Glyma09g06460.1 PUF 830 861

Links

Other PUF family RBPs
Other Glycine max RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.971
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.892
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.881
PK12245.1 Cannabis sativa PK12245.1 N 0.851
ppa000898m Prunus persica ppa000898m N 0.848
MDP0000265231 Malus x domestica MDP0000265231 N 0.843
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.836
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.826
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.819
mgf002285m Mimulus guttatus mgf002285m N 0.789
MDP0000277305 Malus x domestica MDP0000277305 N 0.784
ppa016404m Prunus persica ppa016404m N 0.777
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.776
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.770
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.768
MDP0000313902 Malus x domestica MDP0000313902 N 0.762
30169.m006300 Ricinus communis 30169.m006300 N 0.755
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.755
mgf006786m Mimulus guttatus mgf006786m N 0.752
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.746
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.746
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.728
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.725
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.724
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.724
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.713
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.709
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.704
PK11972.1 Cannabis sativa PK11972.1 N 0.702
APUM6 Arabidopsis thaliana AT4G25880-TAIR-G N 0.701