PTSG_04228 (Salpingoeca rosetta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PTSG_04228 T30279_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.704
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PTSG_04228T0 RRM 86 156

Links

Other RRM family RBPs
Other Salpingoeca rosetta RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.16.225.1 Lottia gigantea e_gw1.16.225.1 I 0.761
XP_002167334.1 Hydra magnipapillata XP_002167334.1 I 0.746
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.732
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.732
Minc13155 Meloidogyne incognita Minc13155 I 0.732
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.732
RBM42 Oryzias latipes ENSORLG00000003387 I 0.732
CBN12017 Caenorhabditis brenneri CBN12017 I 0.718
CBG21313 Caenorhabditis briggsae CBG21313 I 0.718
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.718
CRE29329 Caenorhabditis remanei CRE29329 I 0.718
rbm42 Danio rerio ENSDARG00000039910 I 0.718
Ppa-tag-262 Pristionchus pacificus PPA14507 I 0.718
estExt_fgenesh2_pg.C_90157 Monosiga brevicollis estExt_fgenesh2_pg.C_90157 N 0.718
tag-262 Caenorhabditis elegans Y54H5A.3 I 0.718
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.704
CJA09414 Caenorhabditis japonica CJA09414 I 0.704
RBM42 Sorex araneus ENSSARG00000010724 I 0.704
RBM42 Sus scrofa ENSSSCG00000002905 I 0.704
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.704
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.704
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.704
AAI29698 Xenopus laevis AAI29698 I 0.704
Bm1_40380 Brugia malayi Bm1_40380 I 0.704
LOAG_04208 Loa loa LOAG_04208 I 0.704
A2VDB3 Xenopus laevis A2VDB3 I 0.704
amel4_ncbi_hmm2520 Apis mellifera amel4_ncbi_hmm2520 I 0.704
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.704
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.704
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.704
e_gw.92.129.1 Nematostella vectensis e_gw.92.129.1 I 0.704
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.704
RBM42 Homo sapiens ENSG00000126254 D 0.704
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.704
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.704
RBM42 Microcebus murinus ENSMICG00000009880 I 0.704
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.704
LOC100051102 Equus caballus ENSECAG00000018215 I 0.704
RBM42 Canis familiaris ENSCAFG00000006925 I 0.704
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.704
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.704
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.704
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.704
WUBG_05387 Wuchereria bancrofti WUBG_05387 I 0.704
RBM42 Procavia capensis ENSPCAG00000013053 I 0.704
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.704
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.704
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.704
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.704
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.704
Rbm42 Mus musculus ENSMUSG00000036733 I 0.704
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.704
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.704