CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
AFUA_1G10920
(
Aspergillus fumigatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADAFUAG00007692
T33520_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADAFUAP00007692
RRM
119
192
VFVTSIPLDAEFDEIRDVFSKCGVIAEEIDSGRPRIKMYMDENGKFKGEALIVYFRPESVNLAIQMLDESDFRL
CADAFUAP00007692
RRM
283
338
KDDIREECSKLGEVTNVVLYDKEPDGVVSVRFTDPEAARQCVRVMDGRFFAGTRVE
Links
Other
RRM
family RBPs
Other
Aspergillus fumigatus
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NFIA_014720
Neosartorya fischeri
CADNFIAG00001794
N
1.000
ACLA_024590
Aspergillus clavatus
CADACLAG00002524
N
0.931
ATEG_00286
Aspergillus terreus
CADATEAG00009538
N
0.892
An08g03180
Aspergillus niger
CADANGAG00006637
N
0.869
e_gw1.00083.460.1
Aspergillus carbonarius
e_gw1.00083.460.1
N
0.869
AO090038000318
Aspergillus oryzae
CADAORAG00009105
N
0.862
AFLA_068630
Aspergillus flavus
CADAFLAG00008287
N
0.862
ANIA_01188
Aspergillus nidulans
CADANIAG00001437
N
0.854
PMAA_042630
Penicillium marneffei
PMAA_042630
N
0.815
UREG_05919
Uncinocarpus reesii
UREG_05919
N
0.815
CIMG_06929
Coccidioides immitis
CIMG_06929
N
0.800
CPSG_09587
Coccidioides posadasii
CPSG_09587
N
0.800
HCAG_01782
Histoplasma capsulatum
HCAG_01782
N
0.777
BDBG_00241
Blastomyces dermatitidis
BDBG_00241
N
0.769
ARB_02854
Arthroderma benhamiae
ARB_02854
N
0.762
TESG_05610
Trichophyton tonsurans
TESG_05610
N
0.754
TERG_07903
Trichophyton rubrum
TERG_07903
N
0.754
PABG_00485
Paracoccidioides brasiliensis
PABG_00485
N
0.754
MGYG_04491
Microsporum gypseum
MGYG_04491
N
0.746
MCYG_01582
Microsporum canis
MCYG_01582
N
0.723