CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSBTAG00000011195
(
Bos taurus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSBTAG00000011195
T34838_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.714
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000014868
RRM
19
88
LFIGDLSSETTEESLWDYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAARPHFIDGKMVM
ENSBTAP00000014868
RRM
110
179
LFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKNHTINGHRAE
ENSBTAP00000049379
RRM
17
86
LFIGDLSSETTEESLWDYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAARPHFIDGKMVM
ENSBTAP00000049379
RRM
108
177
LFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKNHTINGHRAE
ENSBTAP00000051073
RRM
14
83
LFIGDLSSETTEESLWDYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAARPHFIDGKMVM
ENSBTAP00000051073
RRM
105
174
LFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKNHTINGHRAE
Links
Other
RRM
family RBPs
Other
Bos taurus
RBPs
52 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC538435
Bos taurus
ENSBTAG00000038680
I
0.800
ENSBTAG00000020849
Bos taurus
ENSBTAG00000020849
I
0.779
ENSPPYG00000017715
Pongo pygmaeus
ENSPPYG00000017715
I
0.769
HNRNPA2B1
Oryctolagus cuniculus
ENSOCUG00000026859
I
0.769
HNRNPA2B1
Macaca mulatta
ENSMMUG00000003619
I
0.769
HNRNPA2B1
Myotis lucifugus
ENSMLUG00000007578
I
0.769
HNRNPA2B1
Pteropus vampyrus
ENSPVAG00000006296
I
0.769
Hnrnpa2b1
Mus musculus
ENSMUSG00000004980
I
0.769
ENSSTOG00000006202
Spermophilus tridecemlineatus
ENSSTOG00000006202
I
0.769
LOC516616
Bos taurus
ENSBTAG00000002284
I
0.769
ROA2_BOVIN
Bos taurus
ENSBTAG00000005726
I
0.769
Ame_R000626
Ailuropoda melanoleuca
Ame_R000626
I
0.769
HNRNPA2B1
Tursiops truncatus
ENSTTRG00000000709
I
0.769
HNRNPA2B1
Meleagris gallopavo
ENSMGAG00000010635
I
0.769
HNRNPA2B1
Taeniopygia guttata
ENSTGUG00000002869
I
0.769
Hnrnpa2b1
Rattus norvegicus
ENSRNOG00000011175
I
0.769
HNRNPA2B1
Pan troglodytes
ENSPTRG00000019002
I
0.769
LOC100068539
Equus caballus
ENSECAG00000000782
I
0.769
HNRNPA2B1
Echinops telfairi
ENSETEG00000018577
I
0.769
HNRNPA2B1
Dasypus novemcinctus
ENSDNOG00000012928
I
0.769
ENSCJAG00000021872
Callithrix jacchus
ENSCJAG00000021872
I
0.769
HNRNPA2B1
Canis familiaris
ENSCAFG00000002885
I
0.769
LOC100401647
Callithrix jacchus
ENSCJAG00000007908
I
0.769
HNRNPA2B1
Homo sapiens
ENSG00000122566
D
0.769
Hnrnpa2b1
Dipodomys ordii
ENSDORG00000005482
I
0.769
HNRNPA2B1
Loxodonta africana
ENSLAFG00000006902
I
0.769
HNRNPA2B1
Gorilla gorilla
ENSGGOG00000017072
I
0.769
Q5ZME1_CHICK
Gallus gallus
ENSGALG00000011036
I
0.769
HNRNPA2B1
Ornithorhynchus anatinus
ENSOANG00000009159
I
0.762
ENSSSCG00000015836
Sus scrofa
ENSSSCG00000015836
I
0.762
ENSMEUG00000014479
Macropus eugenii
ENSMEUG00000014479
I
0.762
HNRNPA2B1
Monodelphis domestica
ENSMODG00000000603
I
0.762
ENSMEUG00000001084
Macropus eugenii
ENSMEUG00000001084
I
0.762
HNRNPA2B1
Choloepus hoffmanni
ENSCHOG00000013832
I
0.762
HNRNPA2B1
Anolis carolinensis
ENSACAG00000012992
I
0.762
ENSSTOG00000009092
Spermophilus tridecemlineatus
ENSSTOG00000009092
I
0.748
hnrnpa2b1
Xenopus tropicalis
ENSXETG00000012170
I
0.741
ENSSSCG00000013607
Sus scrofa
ENSSSCG00000013607
I
0.741
D4A1X0_RAT
Rattus norvegicus
ENSRNOG00000021254
I
0.738
ENSSSCG00000013561
Sus scrofa
ENSSSCG00000013561
I
0.736
ENSSSCG00000013557
Sus scrofa
ENSSSCG00000013557
I
0.736
CBU92450
Xenopus laevis
CBU92450
I
0.734
CBF67577
Xenopus laevis
CBF67577
I
0.734
AAA49948
Xenopus laevis
AAA49948
I
0.734
AAH46692
Xenopus laevis
AAH46692
I
0.734
P51989
Xenopus laevis
P51989
I
0.734
ENSSSCG00000016710
Sus scrofa
ENSSSCG00000016710
I
0.722
AAI06633
Xenopus laevis
AAI06633
I
0.720
AAB59951
Xenopus laevis
AAB59951
I
0.720
AAH43750
Xenopus laevis
AAH43750
I
0.720
P51990
Xenopus laevis
P51990
I
0.720