SFPQ (Choloepus hoffmanni)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCHOG00000009131 T35306_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.782
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.782
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000008074 RRM 1 36
ENSCHOP00000008074 RRM 46 113

Links

Other RRM family RBPs
Other Choloepus hoffmanni RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.971
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.782
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.782
SFPQ Procavia capensis ENSPCAG00000006164 I 0.782
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.782
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.782
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.782
SFPQ Bos taurus ENSBTAG00000016328 I 0.782
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.782
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.782
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.782
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.782
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.782
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.782
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.782
SFPQ Homo sapiens ENSG00000116560 D 0.782
SFPQ Echinops telfairi ENSETEG00000001095 I 0.782
LOC100069588 Equus caballus ENSECAG00000000642 I 0.782
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.782
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.782
SFPQ Microcebus murinus ENSMICG00000011755 I 0.782
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.782
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.782
Sfpq Mus musculus ENSMUSG00000028820 I 0.782
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.774
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.759
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.759
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.759
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.752
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.744
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.729
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.722
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.712
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.707