SFPQ (Pteropus vampyrus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPVAG00000001865 T40839_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.925
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.925
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000001761 RRM 293 356
ENSPVAP00000001761 RRM 366 433

Links

Other RRM family RBPs
Other Pteropus vampyrus RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100069588 Equus caballus ENSECAG00000000642 I 0.925
SFPQ Echinops telfairi ENSETEG00000001095 I 0.925
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.925
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.925
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.925
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.925
SFPQ Homo sapiens ENSG00000116560 D 0.925
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.925
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.925
Sfpq Mus musculus ENSMUSG00000028820 I 0.925
SFPQ Microcebus murinus ENSMICG00000011755 I 0.925
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.925
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.925
SFPQ Bos taurus ENSBTAG00000016328 I 0.925
SFPQ Procavia capensis ENSPCAG00000006164 I 0.925
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.925
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.925
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.925
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.925
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.925
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.925
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.902
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.902
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.895
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.895
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.895
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.895
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.880
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.880
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.880
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.865
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.820
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.812
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.812
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.805
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.774
ENSCJAG00000035318 Callithrix jacchus ENSCJAG00000035318 I 0.767
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.744
sfpq Danio rerio ENSDARG00000011564 I 0.744
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.737
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.714
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.714
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.714
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.707
SFPQ Choloepus hoffmanni ENSCHOG00000009131 I 0.707