SFPQ (Bos taurus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSBTAG00000016328 T34880_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		1.000
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		1.000
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.759
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000021719 RRM 299 363
ENSBTAP00000021719 RRM 373 440

Links

Other RRM family RBPs
Other Bos taurus RBPs

106 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SFPQ Cavia porcellus ENSCPOG00000015018 I 1.000
Sfpq Mus musculus ENSMUSG00000028820 I 1.000
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 1.000
SFPQ Ochotona princeps ENSOPRG00000013696 I 1.000
SFPQ Microcebus murinus ENSMICG00000011755 I 1.000
SFPQ Loxodonta africana ENSLAFG00000015951 I 1.000
SFPQ Homo sapiens ENSG00000116560 D 1.000
LOC100069588 Equus caballus ENSECAG00000000642 I 1.000
SFPQ Gorilla gorilla ENSGGOG00000026354 I 1.000
SFPQ Echinops telfairi ENSETEG00000001095 I 1.000
SFPQ Procavia capensis ENSPCAG00000006164 I 1.000
SFPQ Vicugna pacos ENSVPAG00000006960 I 1.000
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 1.000
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 1.000
SFPQ Tursiops truncatus ENSTTRG00000013930 I 1.000
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 1.000
SFPQ Pan troglodytes ENSPTRG00000000518 I 1.000
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 1.000
Sfpq Rattus norvegicus ENSRNOG00000013154 I 1.000
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 1.000
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.977
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.977
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.970
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.970
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.970
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.962
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.955
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.955
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.940
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.940
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.925
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.887
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.880
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.872
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.872
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.835
ENSCJAG00000035318 Callithrix jacchus ENSCJAG00000035318 I 0.827
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.812
sfpq Danio rerio ENSDARG00000011564 I 0.812
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.805
SFPQ Choloepus hoffmanni ENSCHOG00000009131 I 0.782
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.759
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.759
NONO Otolemur garnettii ENSOGAG00000004834 I 0.759
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.759
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.759
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.759
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.759
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.759
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.759
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.759
NONO Vicugna pacos ENSVPAG00000002272 I 0.759
NONO Tursiops truncatus ENSTTRG00000009605 I 0.759
Nono Rattus norvegicus ENSRNOG00000003689 I 0.759
NONO Spermophilus tridecemlineatus ENSSTOG00000015869 I 0.759
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.759
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.759
NONO Procavia capensis ENSPCAG00000002541 I 0.759
NONO Gorilla gorilla ENSGGOG00000006194 I 0.759
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.759
NONO Loxodonta africana ENSLAFG00000013422 I 0.759
NONO Microcebus murinus ENSMICG00000000232 I 0.759
NONO Macropus eugenii ENSMEUG00000004294 I 0.759
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.759
NONO Homo sapiens ENSG00000147140 D 0.759
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.759
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.759
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.759
Nono Mus musculus ENSMUSG00000031311 I 0.759
NONO Equus caballus ENSECAG00000008502 I 0.759
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.752
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.752
NONO Sorex araneus ENSSARG00000007959 I 0.752
NONO Monodelphis domestica ENSMODG00000004445 I 0.752
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.744
PSPC1_BOVIN Bos taurus ENSBTAG00000003934 I 0.744
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.744
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.744
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.744
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.744
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.744
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.744
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.737
PSPC1 Homo sapiens ENSG00000121390 I 0.737
PSPC1 Macropus eugenii ENSMEUG00000000476 I 0.737
Ame_R014248 Ailuropoda melanoleuca Ame_R014248 I 0.737
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.737
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.737
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 0.737
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.737
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.737
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.737
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.737
Pspc1 Mus musculus ENSMUSG00000021938 I 0.737
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.737
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.737
ENSRNOG00000030425 Rattus norvegicus ENSRNOG00000030425 I 0.737
PSPC1 Sorex araneus ENSSARG00000000888 I 0.737
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.737
NONO Myotis lucifugus ENSMLUG00000002489 I 0.737
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.737
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.729
PSPC1 Felis catus ENSFCAG00000013701 I 0.714
nono Xenopus tropicalis ENSXETG00000020868 I 0.714
AAH45128 Xenopus laevis AAH45128 I 0.714
BAE54372 Xenopus laevis BAE54372 I 0.714