Sfpq (Dipodomys ordii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDORG00000008109 T36476_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.970
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.970
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.737
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.737
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000007610 RRM 295 359
ENSDORP00000007610 RRM 369 435

Links

Other RRM family RBPs
Other Dipodomys ordii RBPs

102 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Sfpq Mus musculus ENSMUSG00000028820 I 0.970
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.970
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.970
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.970
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.970
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.970
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.970
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.970
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.970
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.970
SFPQ Procavia capensis ENSPCAG00000006164 I 0.970
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.970
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.970
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.970
SFPQ Microcebus murinus ENSMICG00000011755 I 0.970
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.970
SFPQ Homo sapiens ENSG00000116560 D 0.970
SFPQ Echinops telfairi ENSETEG00000001095 I 0.970
LOC100069588 Equus caballus ENSECAG00000000642 I 0.970
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.970
SFPQ Bos taurus ENSBTAG00000016328 I 0.970
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.947
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.947
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.940
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.940
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.932
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.925
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.925
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.925
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.910
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.895
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.857
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.850
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.842
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.842
ENSCJAG00000035318 Callithrix jacchus ENSCJAG00000035318 I 0.805
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.805
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.803
sfpq Danio rerio ENSDARG00000011564 I 0.782
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.774
SFPQ Choloepus hoffmanni ENSCHOG00000009131 I 0.752
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.744
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.744
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.744
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.737
NONO Vicugna pacos ENSVPAG00000002272 I 0.737
Nono Rattus norvegicus ENSRNOG00000003689 I 0.737
NONO Spermophilus tridecemlineatus ENSSTOG00000015869 I 0.737
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.737
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.737
NONO Tursiops truncatus ENSTTRG00000009605 I 0.737
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.737
NONO Otolemur garnettii ENSOGAG00000004834 I 0.737
NONO Macropus eugenii ENSMEUG00000004294 I 0.737
NONO Microcebus murinus ENSMICG00000000232 I 0.737
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.737
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.737
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.737
NONO Loxodonta africana ENSLAFG00000013422 I 0.737
NONO Homo sapiens ENSG00000147140 D 0.737
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.737
NONO Gorilla gorilla ENSGGOG00000006194 I 0.737
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.737
NONO Equus caballus ENSECAG00000008502 I 0.737
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.737
NONO Procavia capensis ENSPCAG00000002541 I 0.737
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.737
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.737
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.737
Nono Mus musculus ENSMUSG00000031311 I 0.737
ENSRNOG00000030425 Rattus norvegicus ENSRNOG00000030425 I 0.729
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.729
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.729
PSPC1_BOVIN Bos taurus ENSBTAG00000003934 I 0.729
NONO Monodelphis domestica ENSMODG00000004445 I 0.729
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.729
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.729
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.729
NONO Sorex araneus ENSSARG00000007959 I 0.729
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.722
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.722
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.722
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.722
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.722
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.722
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.722
PSPC1 Macropus eugenii ENSMEUG00000000476 I 0.722
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.722
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.722
PSPC1 Homo sapiens ENSG00000121390 I 0.722
Ame_R014248 Ailuropoda melanoleuca Ame_R014248 I 0.722
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.722
Pspc1 Mus musculus ENSMUSG00000021938 I 0.722
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.722
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 0.722
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.722
PSPC1 Sorex araneus ENSSARG00000000888 I 0.722
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.714
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.714
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.714
NONO Myotis lucifugus ENSMLUG00000002489 I 0.714
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.714