CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A6MKJ4_CALJA
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000002512
T35482_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.996
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.878
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.878
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.878
PABPC3
M144_0.6
Homo sapiens
RAAAACM
RNAcompete
Ray et al.(2013)
RNCMPT00153
0.814
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000004606
RRM
13
83
LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIR
ENSCJAP00000004606
RRM
101
169
VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF
ENSCJAP00000004606
RRM
193
262
VYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF
ENSCJAP00000004606
RRM
296
364
LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY
ENSCJAP00000004611
RRM
46
114
LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
180 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPPYG00000001506
Pongo pygmaeus
ENSPPYG00000001506
I
0.996
PABPC4
Gorilla gorilla
ENSGGOG00000004002
I
0.996
PABPC4
Pan troglodytes
ENSPTRG00000000573
I
0.996
PABPC4
Homo sapiens
ENSG00000090621
D
0.996
PABPC4
Macaca mulatta
ENSMMUG00000007497
I
0.993
LOC100054235
Equus caballus
ENSECAG00000009396
I
0.989
PABPC4
Canis familiaris
ENSCAFG00000003081
I
0.989
ENSMICG00000000431
Microcebus murinus
ENSMICG00000000431
I
0.989
PABPC4
Loxodonta africana
ENSLAFG00000000151
I
0.989
PABPC4
Sus scrofa
ENSSSCG00000003660
I
0.986
PABPC4
Cavia porcellus
ENSCPOG00000009552
I
0.986
A4IFC3_BOVIN
Bos taurus
ENSBTAG00000017125
I
0.982
PABPC4
Oryctolagus cuniculus
ENSOCUG00000000562
I
0.982
PABPC4
Ochotona princeps
ENSOPRG00000011984
I
0.982
Gm10110
Mus musculus
ENSMUSG00000062093
I
0.971
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.971
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.968
PABPC4
Erinaceus europaeus
ENSEEUG00000002962
I
0.968
D3ZEY8_RAT
Rattus norvegicus
ENSRNOG00000028592
I
0.946
ENSMICG00000016633
Microcebus murinus
ENSMICG00000016633
I
0.943
PABPC4
Gallus gallus
ENSGALG00000003800
I
0.935
PABPC4
Taeniopygia guttata
ENSTGUG00000001266
I
0.932
XM_001365232.1
Monodelphis domestica
ENSMODG00000017657
I
0.929
ENSOANG00000010001
Ornithorhynchus anatinus
ENSOANG00000010001
I
0.925
pabpc4
Danio rerio
ENSDARG00000059259
I
0.921
AAH73435
Xenopus laevis
AAH73435
I
0.921
Ame_R019277
Ailuropoda melanoleuca
Ame_R019277
I
0.918
Q8QGJ7_FUGRU
Takifugu rubripes
ENSTRUG00000005907
I
0.918
PABPC4
Oryzias latipes
ENSORLG00000017479
I
0.910
PABPC4
Gasterosteus aculeatus
ENSGACG00000007179
I
0.910
PABPC4
Tetraodon nigroviridis
ENSTNIG00000016902
I
0.910
ENSOANG00000007307
Ornithorhynchus anatinus
ENSOANG00000007307
I
0.882
Pabpc1
Rattus norvegicus
ENSRNOG00000008639
I
0.882
ENSACAG00000016470
Anolis carolinensis
ENSACAG00000016470
I
0.882
Pabpc1
Mus musculus
ENSMUSG00000022283
I
0.882
PABPC1
Taeniopygia guttata
ENSTGUG00000012067
I
0.882
PABPC4
Procavia capensis
ENSPCAG00000003341
I
0.882
ENSPVAG00000016640
Pteropus vampyrus
ENSPVAG00000016640
I
0.878
ENSTTRG00000004689
Tursiops truncatus
ENSTTRG00000004689
I
0.878
ENSCAFG00000000567
Canis familiaris
ENSCAFG00000000567
I
0.878
ENSPPYG00000018790
Pongo pygmaeus
ENSPPYG00000018790
I
0.878
ENSOPRG00000009667
Ochotona princeps
ENSOPRG00000009667
I
0.878
ENSOCUG00000023935
Oryctolagus cuniculus
ENSOCUG00000023935
I
0.878
ENSOCUG00000004354
Oryctolagus cuniculus
ENSOCUG00000004354
I
0.878
ENSSSCG00000006063
Sus scrofa
ENSSSCG00000006063
I
0.878
ENSLAFG00000013994
Loxodonta africana
ENSLAFG00000013994
I
0.878
LOC100413032
Callithrix jacchus
ENSCJAG00000015833
I
0.878
PABPC1
Macaca mulatta
ENSMMUG00000017786
I
0.878
PABPC1
Homo sapiens
ENSG00000070756
D
0.878
XR_030308.1
Monodelphis domestica
ENSMODG00000006222
I
0.875
XR_023909.1
Pan troglodytes
ENSPTRG00000020475
I
0.875
ENSACAG00000002544
Anolis carolinensis
ENSACAG00000002544
I
0.875
AAI08463
Xenopus laevis
AAI08463
I
0.867
pabpc1
Xenopus tropicalis
ENSXETG00000006635
I
0.867
AAH72110
Xenopus laevis
AAH72110
I
0.867
Q6IP09
Xenopus laevis
Q6IP09
I
0.867
ENSTSYG00000004229
Tarsius syrichta
ENSTSYG00000004229
I
0.857
AAH52100
Xenopus laevis
AAH52100
I
0.857
P20965
Xenopus laevis
P20965
I
0.857
CAA40721
Xenopus laevis
CAA40721
I
0.857
PABPC3
Oryzias latipes
ENSORLG00000002691
I
0.853
AAA60936
Xenopus laevis
AAA60936
I
0.853
pabpc4
Xenopus tropicalis
ENSXETG00000010946
I
0.853
Ame_R001741
Ailuropoda melanoleuca
Ame_R001741
I
0.849
PABPC3
Takifugu rubripes
ENSTRUG00000011577
I
0.849
LOC100411130
Callithrix jacchus
ENSCJAG00000018953
I
0.849
ENSPPYG00000005219
Pongo pygmaeus
ENSPPYG00000005219
I
0.846
pabpc1a
Danio rerio
ENSDARG00000017219
I
0.846
PABPC3
Gasterosteus aculeatus
ENSGACG00000003572
I
0.842
PABPC4
Spermophilus tridecemlineatus
ENSSTOG00000010416
I
0.842
ENSTNIG00000009153
Tetraodon nigroviridis
ENSTNIG00000009153
I
0.842
ENSTRUG00000003767
Takifugu rubripes
ENSTRUG00000003767
I
0.842
pabpc1b
Danio rerio
ENSDARG00000021140
I
0.839
XM_001367383.1
Monodelphis domestica
ENSMODG00000017105
I
0.839
ENSORLG00000003008
Oryzias latipes
ENSORLG00000003008
I
0.839
PABPC4
Otolemur garnettii
ENSOGAG00000004067
I
0.835
PABPC3
Macaca mulatta
ENSMMUG00000020835
I
0.832
Pabpc2
Rattus norvegicus
ENSRNOG00000014527
I
0.828
Pabpc2
Mus musculus
ENSMUSG00000051732
I
0.828
ENSGACG00000003771
Gasterosteus aculeatus
ENSGACG00000003771
I
0.828
Q2VIP2_PANTR
Pan troglodytes
ENSPTRG00000022593
I
0.824
PABPC1L
Meleagris gallopavo
ENSMGAG00000003674
I
0.821
Pabpc3
Rattus norvegicus
ENSRNOG00000017367
I
0.821
Pabpc6
Mus musculus
ENSMUSG00000046173
I
0.821
PABPC1L
Anolis carolinensis
ENSACAG00000011841
I
0.817
PABPC1L
Gallus gallus
ENSGALG00000004123
I
0.817
PABPC3
Tetraodon nigroviridis
ENSTNIG00000013307
I
0.814
PABPC3
Homo sapiens
ENSG00000151846
D
0.814
PABPC1L
Monodelphis domestica
ENSMODG00000016198
I
0.806
PABPC1L
Taeniopygia guttata
ENSTGUG00000005114
I
0.803
AAH71118
Xenopus laevis
AAH71118
I
0.803
Q6GR16
Xenopus laevis
Q6GR16
I
0.803
AAK29408
Xenopus laevis
AAK29408
I
0.799
Q98SP8
Xenopus laevis
Q98SP8
I
0.799
AAH80020
Xenopus laevis
AAH80020
I
0.799
PABPC1L
Gasterosteus aculeatus
ENSGACG00000002792
I
0.799
PABPC1L
Sus scrofa
ENSSSCG00000007382
I
0.799
PABPC1L
Takifugu rubripes
ENSTRUG00000011085
I
0.796
PABPC1L
Macropus eugenii
ENSMEUG00000007905
I
0.796
PABPC1L
Bos taurus
ENSBTAG00000016849
I
0.796
PABPC1L
Oryctolagus cuniculus
ENSOCUG00000003005
I
0.796
Ame_R005305
Ailuropoda melanoleuca
Ame_R005305
I
0.792
XM_001373066.1
Monodelphis domestica
ENSMODG00000013156
I
0.792
pabpc1l
Danio rerio
ENSDARG00000002597
I
0.792
pabpc1l
Xenopus tropicalis
ENSXETG00000022831
I
0.789
PABPC1L
Microcebus murinus
ENSMICG00000000974
I
0.789
LOC100070836
Equus caballus
ENSECAG00000022681
I
0.789
PABPC1L
Macaca mulatta
ENSMMUG00000013209
I
0.785
PABPC1L
Canis familiaris
ENSCAFG00000009573
I
0.785
PABPC1L
Loxodonta africana
ENSLAFG00000003553
I
0.785
PABPC1L
Pan troglodytes
ENSPTRG00000013531
I
0.785
PABPC1L
Oryzias latipes
ENSORLG00000010322
I
0.784
PABPC1L
Homo sapiens
ENSG00000101104
I
0.781
PABPC1L
Gorilla gorilla
ENSGGOG00000004584
I
0.781
ENSPPYG00000011042
Pongo pygmaeus
ENSPPYG00000011042
I
0.781
PABPC1L
Erinaceus europaeus
ENSEEUG00000005978
I
0.781
PABPC1L
Ochotona princeps
ENSOPRG00000011846
I
0.781
PABPC1L
Pteropus vampyrus
ENSPVAG00000012663
I
0.778
PABPC1L
Tarsius syrichta
ENSTSYG00000006645
I
0.774
PHUM617090
Pediculus humanus
PHUM617090
I
0.774
PABPC1L
Callithrix jacchus
ENSCJAG00000017628
I
0.771
BGIBMGA003469
Bombyx mori
BGIBMGA003469
I
0.770
PABPC1L
Tursiops truncatus
ENSTTRG00000007618
I
0.763
LOC100056021
Equus caballus
ENSECAG00000020699
I
0.763
CPIJ007980
Culex quinquefasciatus
CPIJ007980
I
0.763
CpipJ_CPIJ007980
Culex pipiens
CpipJ_CPIJ007980
I
0.763
PABPC1L
Cavia porcellus
ENSCPOG00000013633
I
0.760
AAEL010318
Aedes aegypti
AAEL010318
I
0.760
ISCW014211
Ixodes scapularis
ISCW014211
I
0.754
gw.1.65.1
Branchiostoma floridae
gw.1.65.1
I
0.753
amel4_ncbi_hmm2036
Apis mellifera
amel4_ncbi_hmm2036
I
0.753
AGAP011092
Anopheles gambiae
AGAP011092
I
0.753
nasonia_NCBI_hmm394743
Nasonia vitripennis
nasonia_NCBI_hmm394743
I
0.753
nasonia_NCBI_hmm386743
Nasonia vitripennis
nasonia_NCBI_hmm386743
I
0.753
amel4_ncbi_hmm1700
Apis mellifera
amel4_ncbi_hmm1700
I
0.753
amel4_ncbi_hmm1364
Apis mellifera
amel4_ncbi_hmm1364
I
0.753
nasonia_NCBI_hmm390743
Nasonia vitripennis
nasonia_NCBI_hmm390743
I
0.753
e_gw.313.40.1
Branchiostoma floridae
e_gw.313.40.1
I
0.753
PABPC4
Myotis lucifugus
ENSMLUG00000012068
I
0.749
Pabpc1l
Mus musculus
ENSMUSG00000054582
I
0.746
estExt_Genewise1.C_1790010
Capitella teleta
estExt_Genewise1.C_1790010
I
0.742
Pabpc1l
Rattus norvegicus
ENSRNOG00000012750
I
0.742
XM_001379460.1
Monodelphis domestica
ENSMODG00000015024
I
0.739
DGIL_AUG5s5076g2t1
Acyrtosiphon pisum
DGIL_AUG5s5076g2t1
I
0.739
XP_801795.2
Strongylocentrotus purpuratus
XP_801795.2
I
0.736
XP_001177907.1
Strongylocentrotus purpuratus
XP_001177907.1
I
0.736
ENSMICG00000009121
Microcebus murinus
ENSMICG00000009121
I
0.735
ENSCING00000002796
Ciona intestinalis
ENSCING00000002796
I
0.731
ENSCSAVG00000004246
Ciona savignyi
ENSCSAVG00000004246
I
0.731
BDE_estExt_fgenesh1_pg.C_380037
Daphnia pulex
BDE_estExt_fgenesh1_pg.C_380037
I
0.729
e_gw1.115.135.1
Lottia gigantea
e_gw1.115.135.1
I
0.728
ENSG00000250177
Homo sapiens
ENSG00000250177
I
0.728
GJ21671
Drosophila virilis
FBgn0208790
I
0.725
GH21052
Drosophila grimshawi
FBgn0128514
I
0.725
PABPC1L
Tetraodon nigroviridis
ENSTNIG00000017903
I
0.724
fgenesh1_pm.scaffold_278000002
Nematostella vectensis
fgenesh1_pm.scaffold_278000002
I
0.722
GI18654
Drosophila mojavensis
FBgn0141393
I
0.722
GK19652
Drosophila willistoni
FBgn0221650
I
0.718
GL11548
Drosophila persimilis
FBgn0149157
I
0.715
GA18673-RA
Drosophila pseudoobscura
FBgn0078673
I
0.715
PABPC4L
Callithrix jacchus
ENSCJAG00000003241
I
0.714
estExt_Genewise1.C_sca_1150143
Lottia gigantea
estExt_Genewise1.C_sca_1150143
I
0.714
GE11925
Drosophila yakuba
FBgn0229707
I
0.708
LOAG_01058
Loa loa
LOAG_01058
I
0.708
Q2VIP1_9PRIM
Gorilla gorilla
ENSGGOG00000006785
I
0.708
Bm1_06880
Brugia malayi
Bm1_06880
I
0.708
Bm1_16080
Brugia malayi
Bm1_16080
I
0.708
ENSCSAVG00000003102
Ciona savignyi
ENSCSAVG00000003102
I
0.707
DGIL_AUG5s9152g1t1
Acyrtosiphon pisum
DGIL_AUG5s9152g1t1
I
0.707
185682
Helobdella robusta
185682
I
0.707
DGIL_AUG5s1591g1t1
Acyrtosiphon pisum
DGIL_AUG5s1591g1t1
I
0.707
PABPC1L
Spermophilus tridecemlineatus
ENSSTOG00000003739
I
0.706
e_gw1.7.538.1
Trichoplax adhaerens
e_gw1.7.538.1
I
0.704
GG21846
Drosophila erecta
FBgn0114024
I
0.704
GF12652
Drosophila ananassae
FBgn0089688
I
0.701
GM21847
Drosophila sechellia
FBgn0176724
I
0.701
GD11341
Drosophila simulans
FBgn0183090
I
0.701
pAbp
Drosophila melanogaster
FBgn0261619
D
0.701
e_gw1.15.88.1
Trichoplax adhaerens
e_gw1.15.88.1
N
0.700
A7TSM7_VANPO
Vanderwaltozyma polyspora
A7TSM7_VANPO
N
0.700