PABPC4 (Erinaceus europaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSEEUG00000002962 T36750_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.971
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.875
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.875
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.875
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.810
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000002730 RRM 13 83
ENSEEUP00000002730 RRM 101 168
ENSEEUP00000002730 RRM 192 261
ENSEEUP00000002730 RRM 295 363

Links

Other RRM family RBPs
Other Erinaceus europaeus RBPs

170 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.978
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.978
LOC100054235 Equus caballus ENSECAG00000009396 I 0.978
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.978
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.978
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.975
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.975
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.975
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.975
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.971
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.971
PABPC4 Homo sapiens ENSG00000090621 D 0.971
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.971
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.971
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.968
Gm10110 Mus musculus ENSMUSG00000062093 I 0.961
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.957
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.957
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.935
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.935
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.929
PABPC4 Gallus gallus ENSGALG00000003800 I 0.928
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.928
AAH73435 Xenopus laevis AAH73435 I 0.921
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.921
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.914
pabpc4 Danio rerio ENSDARG00000059259 I 0.914
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.910
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.907
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.907
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.903
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.878
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.878
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.878
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.878
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.878
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.878
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.875
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.875
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.875
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.875
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.875
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.875
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.875
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.875
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.875
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.875
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.875
PABPC1 Homo sapiens ENSG00000070756 D 0.875
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.871
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.871
AAI08463 Xenopus laevis AAI08463 I 0.867
Q6IP09 Xenopus laevis Q6IP09 I 0.867
AAH72110 Xenopus laevis AAH72110 I 0.867
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.864
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.864
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.853
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.853
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.853
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.853
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.849
CAA40721 Xenopus laevis CAA40721 I 0.846
AAH52100 Xenopus laevis AAH52100 I 0.846
P20965 Xenopus laevis P20965 I 0.846
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.846
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.846
pabpc1a Danio rerio ENSDARG00000017219 I 0.842
AAA60936 Xenopus laevis AAA60936 I 0.842
pabpc1b Danio rerio ENSDARG00000021140 I 0.839
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.839
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.839
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.839
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.839
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.839
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.839
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.832
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.828
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.828
PABPC1L Gallus gallus ENSGALG00000004123 I 0.824
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.824
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.824
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.821
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.821
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.821
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.821
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.817
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.817
PABPC3 Homo sapiens ENSG00000151846 D 0.810
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.810
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.806
AAH71118 Xenopus laevis AAH71118 I 0.806
Q6GR16 Xenopus laevis Q6GR16 I 0.806
AAK29408 Xenopus laevis AAK29408 I 0.803
Q98SP8 Xenopus laevis Q98SP8 I 0.803
AAH80020 Xenopus laevis AAH80020 I 0.803
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.799
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.796
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.796
PABPC1L Bos taurus ENSBTAG00000016849 I 0.792
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.792
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.792
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.792
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.789
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.789
LOC100070836 Equus caballus ENSECAG00000022681 I 0.789
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.789
pabpc1l Danio rerio ENSDARG00000002597 I 0.785
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.785
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.785
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.781
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.781
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.781
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.781
PABPC1L Homo sapiens ENSG00000101104 I 0.778
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.778
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.778
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.778
PHUM617090 Pediculus humanus PHUM617090 I 0.774
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.774
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.771
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.767
LOC100056021 Equus caballus ENSECAG00000020699 I 0.760
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.760
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.760
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.760
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.756
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.756
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.756
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.756
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.756
ISCW014211 Ixodes scapularis ISCW014211 I 0.754
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.753
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.753
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.753
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.749
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.749
AGAP011092 Anopheles gambiae AGAP011092 I 0.749
AAEL010318 Aedes aegypti AAEL010318 I 0.746
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.742
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.742
PABPC4 Myotis lucifugus ENSMLUG00000012068 I 0.739
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.738
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.735
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.731
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.729
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.728
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.728
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.728
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.728
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.728
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.725
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.725
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.722
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.721
GH21052 Drosophila grimshawi FBgn0128514 I 0.718
GJ21671 Drosophila virilis FBgn0208790 I 0.718
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.717
GI18654 Drosophila mojavensis FBgn0141393 I 0.715
PABPC4L Callithrix jacchus ENSCJAG00000003241 I 0.714
185682 Helobdella robusta 185682 I 0.714
GK19652 Drosophila willistoni FBgn0221650 I 0.711
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.711
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.708
GL11548 Drosophila persimilis FBgn0149157 I 0.708
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.706
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.704
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.703
LOAG_01058 Loa loa LOAG_01058 I 0.701
Bm1_16080 Brugia malayi Bm1_16080 I 0.701
GE11925 Drosophila yakuba FBgn0229707 I 0.701