PABPC4 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000017479 T40251_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.910
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.867
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.867
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.867
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000021856 RRM 13 83
ENSORLP00000021856 RRM 101 169
ENSORLP00000021856 RRM 193 262
ENSORLP00000021856 RRM 296 364
ENSORLP00000021857 RRM 13 83
ENSORLP00000021857 RRM 101 169
ENSORLP00000021857 RRM 193 262
ENSORLP00000021857 RRM 296 364

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

169 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.957
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.957
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.957
pabpc4 Danio rerio ENSDARG00000059259 I 0.957
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.939
PABPC4 Gallus gallus ENSGALG00000003800 I 0.939
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.932
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.929
AAH73435 Xenopus laevis AAH73435 I 0.921
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.918
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.914
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.914
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.914
Gm10110 Mus musculus ENSMUSG00000062093 I 0.914
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.914
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.914
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.914
LOC100054235 Equus caballus ENSECAG00000009396 I 0.914
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.910
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.910
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.910
PABPC4 Homo sapiens ENSG00000090621 D 0.910
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.910
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.910
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.910
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.907
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.907
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.903
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.882
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.878
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.871
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.871
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.871
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.871
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.871
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.871
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.867
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.867
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.867
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.867
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.867
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.867
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.867
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.867
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.867
PABPC1 Homo sapiens ENSG00000070756 D 0.867
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.867
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.867
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.864
AAH72110 Xenopus laevis AAH72110 I 0.864
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.864
AAI08463 Xenopus laevis AAI08463 I 0.864
Q6IP09 Xenopus laevis Q6IP09 I 0.864
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.860
P20965 Xenopus laevis P20965 I 0.860
CAA40721 Xenopus laevis CAA40721 I 0.860
AAH52100 Xenopus laevis AAH52100 I 0.860
AAA60936 Xenopus laevis AAA60936 I 0.857
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.857
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.853
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.853
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.849
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.849
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.849
pabpc1a Danio rerio ENSDARG00000017219 I 0.849
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.849
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.846
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.842
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.839
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.839
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.835
pabpc1b Danio rerio ENSDARG00000021140 I 0.832
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.828
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.824
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.821
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.821
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.821
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.818
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.814
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.810
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.810
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.806
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.806
PABPC1L Gallus gallus ENSGALG00000004123 I 0.806
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.803
PABPC3 Homo sapiens ENSG00000151846 D 0.803
Q6GR16 Xenopus laevis Q6GR16 I 0.792
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.792
AAH71118 Xenopus laevis AAH71118 I 0.792
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.785
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.785
Q98SP8 Xenopus laevis Q98SP8 I 0.781
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.781
AAH80020 Xenopus laevis AAH80020 I 0.781
AAK29408 Xenopus laevis AAK29408 I 0.781
pabpc1l Danio rerio ENSDARG00000002597 I 0.781
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.778
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.778
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.774
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.774
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.774
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.771
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.771
AAEL010318 Aedes aegypti AAEL010318 I 0.770
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.770
PABPC1L Bos taurus ENSBTAG00000016849 I 0.767
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.767
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.767
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.767
ISCW014211 Ixodes scapularis ISCW014211 I 0.764
PHUM617090 Pediculus humanus PHUM617090 I 0.763
LOC100070836 Equus caballus ENSECAG00000022681 I 0.760
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.760
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.760
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.756
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.756
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.756
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.756
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.756
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.756
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.756
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.756
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.756
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.756
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.753
LOC100056021 Equus caballus ENSECAG00000020699 I 0.753
PABPC1L Homo sapiens ENSG00000101104 I 0.753
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.753
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.753
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.753
AGAP011092 Anopheles gambiae AGAP011092 I 0.753
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.753
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.753
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.746
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.742
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.742
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.742
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.742
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.739
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.738
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.735
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.735
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.731
GH21052 Drosophila grimshawi FBgn0128514 I 0.729
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.728
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.725
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.725
PABPC4L Callithrix jacchus ENSCJAG00000003241 I 0.724
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.724
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.724
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.722
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.722
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.721
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.717
GI18654 Drosophila mojavensis FBgn0141393 I 0.711
GK19652 Drosophila willistoni FBgn0221650 I 0.711
GJ21671 Drosophila virilis FBgn0208790 I 0.711
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.710
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.710
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.707
185682 Helobdella robusta 185682 I 0.707
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.706
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.703
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.701
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.701
GL11548 Drosophila persimilis FBgn0149157 I 0.701
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.701
GE11925 Drosophila yakuba FBgn0229707 I 0.701