Q8QGJ7_FUGRU (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000005907 T42243_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.918
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.871
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.871
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.871
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.806
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000014384 RRM 13 83
ENSTRUP00000014384 RRM 101 169
ENSTRUP00000014384 RRM 193 262
ENSTRUP00000014384 RRM 296 364
ENSTRUP00000014385 RRM 13 83
ENSTRUP00000014385 RRM 101 169
ENSTRUP00000014385 RRM 193 262
ENSTRUP00000014385 RRM 296 364
ENSTRUP00000014386 RRM 13 83
ENSTRUP00000014386 RRM 101 169
ENSTRUP00000014386 RRM 193 262
ENSTRUP00000014386 RRM 296 364

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

166 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.989
pabpc4 Danio rerio ENSDARG00000059259 I 0.986
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.978
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.957
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.950
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.950
PABPC4 Gallus gallus ENSGALG00000003800 I 0.950
AAH73435 Xenopus laevis AAH73435 I 0.935
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.932
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.921
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.918
PABPC4 Homo sapiens ENSG00000090621 D 0.918
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.918
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.918
LOC100054235 Equus caballus ENSECAG00000009396 I 0.918
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.918
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.918
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.918
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.918
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.918
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.918
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.918
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.918
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.914
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.914
Gm10110 Mus musculus ENSMUSG00000062093 I 0.910
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.907
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.907
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.896
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.882
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.875
AAI08463 Xenopus laevis AAI08463 I 0.875
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.875
AAH72110 Xenopus laevis AAH72110 I 0.875
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.875
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.875
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.875
Q6IP09 Xenopus laevis Q6IP09 I 0.875
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.871
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.871
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.871
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.871
PABPC1 Homo sapiens ENSG00000070756 D 0.871
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.871
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.871
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.871
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.871
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.871
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.871
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.871
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.871
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.871
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.868
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.867
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.867
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.864
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.860
AAH52100 Xenopus laevis AAH52100 I 0.857
P20965 Xenopus laevis P20965 I 0.857
CAA40721 Xenopus laevis CAA40721 I 0.857
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.853
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.853
AAA60936 Xenopus laevis AAA60936 I 0.853
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.849
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.849
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.846
pabpc1a Danio rerio ENSDARG00000017219 I 0.846
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.842
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.842
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.839
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.839
pabpc1b Danio rerio ENSDARG00000021140 I 0.832
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.832
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.832
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.832
PABPC1L Gallus gallus ENSGALG00000004123 I 0.828
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.825
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.824
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.821
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.821
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.817
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.814
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.810
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.810
PABPC3 Homo sapiens ENSG00000151846 D 0.806
Q6GR16 Xenopus laevis Q6GR16 I 0.806
AAH71118 Xenopus laevis AAH71118 I 0.806
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.803
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.799
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.799
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.796
AAK29408 Xenopus laevis AAK29408 I 0.796
Q98SP8 Xenopus laevis Q98SP8 I 0.796
AAH80020 Xenopus laevis AAH80020 I 0.796
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.792
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.785
pabpc1l Danio rerio ENSDARG00000002597 I 0.781
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.781
PABPC1L Bos taurus ENSBTAG00000016849 I 0.778
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.778
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.778
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.774
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.774
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.774
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.771
LOC100070836 Equus caballus ENSECAG00000022681 I 0.767
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.767
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.767
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.767
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.767
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.767
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.763
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.763
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.763
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.760
PABPC1L Homo sapiens ENSG00000101104 I 0.760
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.760
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.760
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.760
LOC100056021 Equus caballus ENSECAG00000020699 I 0.756
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.756
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.756
AAEL010318 Aedes aegypti AAEL010318 I 0.756
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.756
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.756
PHUM617090 Pediculus humanus PHUM617090 I 0.753
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.749
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.749
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.749
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.749
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.749
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.746
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.746
AGAP011092 Anopheles gambiae AGAP011092 I 0.746
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.746
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.746
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.746
ISCW014211 Ixodes scapularis ISCW014211 I 0.743
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.735
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.735
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.732
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.731
GH21052 Drosophila grimshawi FBgn0128514 I 0.729
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.724
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.724
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.724
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.722
PABPC4L Callithrix jacchus ENSCJAG00000003241 I 0.721
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.721
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.721
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.721
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.718
GI18654 Drosophila mojavensis FBgn0141393 I 0.718
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.718
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.717
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.717
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.713
GJ21671 Drosophila virilis FBgn0208790 I 0.711
185682 Helobdella robusta 185682 I 0.710
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.708
GL11548 Drosophila persimilis FBgn0149157 I 0.708
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.704
GK19652 Drosophila willistoni FBgn0221650 I 0.704
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.701
GE11925 Drosophila yakuba FBgn0229707 I 0.701