CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZNF638
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000019436
T35670_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ZNF638
M155_0.6
Homo sapiens
BGUUSKU
RNAcompete
Ray et al.(2013)
RNCMPT00164
0.868
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000036116
RRM
680
746
LLISELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAVTAIMKHIETTPLMIKGKNV
ENSCJAP00000036116
RRM
909
955
MLISNLPNKGYSTEEVCDLAKPFGGLKDVLIFSSHKKAYIEINRKAA
ENSCJAP00000050021
RRM
680
746
LLISELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAVTAIMKHIETTPLMIKGKNV
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZNF638
Pan troglodytes
ENSPTRG00000012048
I
0.877
ZNF638
Homo sapiens
ENSG00000075292
D
0.868
ZNF638
Gorilla gorilla
ENSGGOG00000012511
I
0.861
ZNF638
Macaca mulatta
ENSMMUG00000007175
I
0.857
ZNF638
Tarsius syrichta
ENSTSYG00000012849
I
0.793
ZNF638
Canis familiaris
ENSCAFG00000009067
I
0.789
ZNF638
Tursiops truncatus
ENSTTRG00000014220
I
0.786
ZNF638
Oryctolagus cuniculus
ENSOCUG00000010045
I
0.784
ZNF638
Vicugna pacos
ENSVPAG00000004117
I
0.767
Ame_R002690
Ailuropoda melanoleuca
Ame_R002690
I
0.763
ZNF638
Equus caballus
ENSECAG00000007715
I
0.763
ZNF638
Ochotona princeps
ENSOPRG00000011644
N
0.761
ZNF638
Pteropus vampyrus
ENSPVAG00000008368
I
0.754
ZNF638
Dasypus novemcinctus
ENSDNOG00000002173
I
0.754
Zfml
Dipodomys ordii
ENSDORG00000007360
I
0.741
ZNF638
Bos taurus
ENSBTAG00000009242
I
0.731
ZNF638
Monodelphis domestica
ENSMODG00000010964
N
0.728
ZNF638
Loxodonta africana
ENSLAFG00000008513
I
0.711
ZNF638
Sorex araneus
ENSSARG00000000956
I
0.702
ZNF638
Macropus eugenii
ENSMEUG00000008620
N
0.702