CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZNF638
(
Gorilla gorilla
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGGOG00000012511
T37854_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ZNF638
M155_0.6
Homo sapiens
BGUUSKU
RNAcompete
Ray et al.(2013)
RNCMPT00164
0.954
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000012216
RRM
679
738
LLISELPEDGCTEDDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTPL
ENSGGOP00000012216
RRM
908
955
MLISNLPNKGYSVEEVYDLAKPFGGLKDILILSSHKKAYIEIDRKAAE
Links
Other
RRM
family RBPs
Other
Gorilla gorilla
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZNF638
Pan troglodytes
ENSPTRG00000012048
I
0.963
ZNF638
Homo sapiens
ENSG00000075292
D
0.954
ZNF638
Macaca mulatta
ENSMMUG00000007175
I
0.929
ZNF638
Tarsius syrichta
ENSTSYG00000012849
I
0.862
ZNF638
Vicugna pacos
ENSVPAG00000004117
I
0.862
ZNF638
Callithrix jacchus
ENSCJAG00000019436
I
0.861
ZNF638
Dasypus novemcinctus
ENSDNOG00000002173
I
0.853
ZNF638
Oryctolagus cuniculus
ENSOCUG00000010045
I
0.844
ZNF638
Tursiops truncatus
ENSTTRG00000014220
I
0.841
ZNF638
Equus caballus
ENSECAG00000007715
I
0.838
ZNF638
Canis familiaris
ENSCAFG00000009067
I
0.835
Zfml
Dipodomys ordii
ENSDORG00000007360
I
0.818
Ame_R002690
Ailuropoda melanoleuca
Ame_R002690
I
0.807
ZNF638
Bos taurus
ENSBTAG00000009242
I
0.804
ZNF638
Pteropus vampyrus
ENSPVAG00000008368
I
0.787
ZNF638
Loxodonta africana
ENSLAFG00000008513
I
0.787
ZNF638
Sorex araneus
ENSSARG00000000956
I
0.759
Zfml
Rattus norvegicus
ENSRNOG00000014501
I
0.723
ZNF638
Cavia porcellus
ENSCPOG00000010101
I
0.712